miRNA display CGI


Results 41 - 60 of 512 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23620 3' -63.3 NC_005261.1 + 12154 0.75 0.147895
Target:  5'- cGCGCaGGCcccaAGCCCCGcacaGGCCAGCGCc -3'
miRNA:   3'- -CGUGgUCG----UCGGGGCa---CCGGUCGCGc -5'
23620 3' -63.3 NC_005261.1 + 103585 0.75 0.151594
Target:  5'- cGCGCCGucGCucGCCgCCGUGGCCgcggcggcAGCGCGg -3'
miRNA:   3'- -CGUGGU--CGu-CGG-GGCACCGG--------UCGCGC- -5'
23620 3' -63.3 NC_005261.1 + 35689 0.75 0.151594
Target:  5'- cCGCCGGCgAGCCCCGgugGGCCGGgGg- -3'
miRNA:   3'- cGUGGUCG-UCGGGGCa--CCGGUCgCgc -5'
23620 3' -63.3 NC_005261.1 + 100210 0.75 0.154996
Target:  5'- -gGCCAGCAGCCCCGcguagagcucGGCCaccgccgGGCGCa -3'
miRNA:   3'- cgUGGUCGUCGGGGCa---------CCGG-------UCGCGc -5'
23620 3' -63.3 NC_005261.1 + 105285 0.75 0.159246
Target:  5'- aGCGCCGGCgAGCCCgGgcgcGCgAGCGCGg -3'
miRNA:   3'- -CGUGGUCG-UCGGGgCac--CGgUCGCGC- -5'
23620 3' -63.3 NC_005261.1 + 12321 0.75 0.163201
Target:  5'- -aGCCGGCGGgCgCGcgcuUGGCCGGCGCGg -3'
miRNA:   3'- cgUGGUCGUCgGgGC----ACCGGUCGCGC- -5'
23620 3' -63.3 NC_005261.1 + 43306 0.75 0.163201
Target:  5'- gGCGCCGGCAGCCC---GGCCAGCu-- -3'
miRNA:   3'- -CGUGGUCGUCGGGgcaCCGGUCGcgc -5'
23620 3' -63.3 NC_005261.1 + 84562 0.75 0.163201
Target:  5'- aGCGCCuggAGCacGGCCCCGUagacggccgucuGcGCCAGCGCGc -3'
miRNA:   3'- -CGUGG---UCG--UCGGGGCA------------C-CGGUCGCGC- -5'
23620 3' -63.3 NC_005261.1 + 64732 0.74 0.170544
Target:  5'- uGCACCAGguCGGCCCCGacguugcggaaguUGGCCucggccagcucgcGGCGCGc -3'
miRNA:   3'- -CGUGGUC--GUCGGGGC-------------ACCGG-------------UCGCGC- -5'
23620 3' -63.3 NC_005261.1 + 83593 0.74 0.17096
Target:  5'- cCGCCAGCAGCgcgucgcucuccgCCgcggCGUGGuCCAGCGCGa -3'
miRNA:   3'- cGUGGUCGUCG-------------GG----GCACC-GGUCGCGC- -5'
23620 3' -63.3 NC_005261.1 + 62562 0.74 0.171377
Target:  5'- cCGCCAGCAugcGCCCCG-GcGCCAcGCGCa -3'
miRNA:   3'- cGUGGUCGU---CGGGGCaC-CGGU-CGCGc -5'
23620 3' -63.3 NC_005261.1 + 121632 0.74 0.171377
Target:  5'- cCGCuCGGCGGCCgCCGccGGCgAGCGCGg -3'
miRNA:   3'- cGUG-GUCGUCGG-GGCa-CCGgUCGCGC- -5'
23620 3' -63.3 NC_005261.1 + 74893 0.74 0.171377
Target:  5'- gGCGgagUCGGCGGCCCgCGcUGGCC-GCGCGg -3'
miRNA:   3'- -CGU---GGUCGUCGGG-GC-ACCGGuCGCGC- -5'
23620 3' -63.3 NC_005261.1 + 1179 0.74 0.171377
Target:  5'- cGCGCC-GCGGCCggggCCGgGGCCGGgCGCGg -3'
miRNA:   3'- -CGUGGuCGUCGG----GGCaCCGGUC-GCGC- -5'
23620 3' -63.3 NC_005261.1 + 84849 0.74 0.175175
Target:  5'- aGCACCAccGCGGgCCgCGUGGCCaugaccgAGCGCa -3'
miRNA:   3'- -CGUGGU--CGUCgGG-GCACCGG-------UCGCGc -5'
23620 3' -63.3 NC_005261.1 + 58117 0.74 0.175601
Target:  5'- cGCGCgAGCAGCCUgccgagCGUGGCCAcCGCc -3'
miRNA:   3'- -CGUGgUCGUCGGG------GCACCGGUcGCGc -5'
23620 3' -63.3 NC_005261.1 + 63593 0.74 0.175601
Target:  5'- aGCGgCGcGgGGCCCUGUGGCCGGaUGCGg -3'
miRNA:   3'- -CGUgGU-CgUCGGGGCACCGGUC-GCGC- -5'
23620 3' -63.3 NC_005261.1 + 117676 0.74 0.183882
Target:  5'- cGCGCCcggccgGGCccgcggcgaggccGGCCCUGaGGCCGGCGCGc -3'
miRNA:   3'- -CGUGG------UCG-------------UCGGGGCaCCGGUCGCGC- -5'
23620 3' -63.3 NC_005261.1 + 61998 0.74 0.184327
Target:  5'- cCGCCAGC-GCCCCGUacaGGCaaaAGCGCc -3'
miRNA:   3'- cGUGGUCGuCGGGGCA---CCGg--UCGCGc -5'
23620 3' -63.3 NC_005261.1 + 58216 0.74 0.184327
Target:  5'- cGCGCCAGCAGCgcgCCCGcGGC-GGCGgGg -3'
miRNA:   3'- -CGUGGUCGUCG---GGGCaCCGgUCGCgC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.