miRNA display CGI


Results 61 - 80 of 512 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23620 3' -63.3 NC_005261.1 + 97869 0.74 0.184327
Target:  5'- cGCgGCCGGCaucgauuuccgAGCCCCG-GGCCGGCGg- -3'
miRNA:   3'- -CG-UGGUCG-----------UCGGGGCaCCGGUCGCgc -5'
23620 3' -63.3 NC_005261.1 + 88928 0.74 0.188833
Target:  5'- cGCGCCcGCAGCUCUuuuacaagguGUccucGGCCAGCGCGc -3'
miRNA:   3'- -CGUGGuCGUCGGGG----------CA----CCGGUCGCGC- -5'
23620 3' -63.3 NC_005261.1 + 126064 0.74 0.188833
Target:  5'- gGCGCCAGCcGCCcgCCGgccucGGCgGGCGCGc -3'
miRNA:   3'- -CGUGGUCGuCGG--GGCa----CCGgUCGCGC- -5'
23620 3' -63.3 NC_005261.1 + 3483 0.74 0.193435
Target:  5'- cGCGCCAGCggGGCCaCgGUucgcgccGCCAGCGCGg -3'
miRNA:   3'- -CGUGGUCG--UCGG-GgCAc------CGGUCGCGC- -5'
23620 3' -63.3 NC_005261.1 + 97770 0.74 0.193435
Target:  5'- cGCgGCCGGCaucgacucccgAGCCCCG-GGCCGGCGa- -3'
miRNA:   3'- -CG-UGGUCG-----------UCGGGGCaCCGGUCGCgc -5'
23620 3' -63.3 NC_005261.1 + 3855 0.73 0.198134
Target:  5'- gGCGCCGGC-GCCgCGcGGCCGGCGa- -3'
miRNA:   3'- -CGUGGUCGuCGGgGCaCCGGUCGCgc -5'
23620 3' -63.3 NC_005261.1 + 13218 0.73 0.198134
Target:  5'- aCugCAGCacgaagacguagAGCCCCGaggccgaGGCCGGCGCGc -3'
miRNA:   3'- cGugGUCG------------UCGGGGCa------CCGGUCGCGC- -5'
23620 3' -63.3 NC_005261.1 + 43410 0.73 0.198134
Target:  5'- gGCGCCgggGGCGGCCuCCGccGCCGGCGgGg -3'
miRNA:   3'- -CGUGG---UCGUCGG-GGCacCGGUCGCgC- -5'
23620 3' -63.3 NC_005261.1 + 59480 0.73 0.202933
Target:  5'- aGCGCCGGCgcGGCCgCCGc-GCCAGCgGCGg -3'
miRNA:   3'- -CGUGGUCG--UCGG-GGCacCGGUCG-CGC- -5'
23620 3' -63.3 NC_005261.1 + 83690 0.73 0.202933
Target:  5'- cGCGCCgccgaGGCGGCgCCGcaGCCAGCGCa -3'
miRNA:   3'- -CGUGG-----UCGUCGgGGCacCGGUCGCGc -5'
23620 3' -63.3 NC_005261.1 + 122230 0.73 0.204881
Target:  5'- --uCCAgGCGGCCCCGacgcgcaucagcagGGCCAGCGCc -3'
miRNA:   3'- cguGGU-CGUCGGGGCa-------------CCGGUCGCGc -5'
23620 3' -63.3 NC_005261.1 + 54302 0.73 0.207338
Target:  5'- gGCGCCGGUuaacaccAGCUCCagcaaggcGUGGCCgAGCGCGu -3'
miRNA:   3'- -CGUGGUCG-------UCGGGG--------CACCGG-UCGCGC- -5'
23620 3' -63.3 NC_005261.1 + 58764 0.73 0.207833
Target:  5'- cGCGCCgagAGC-GCCCCcagcgcgccGGCCAGCGCGc -3'
miRNA:   3'- -CGUGG---UCGuCGGGGca-------CCGGUCGCGC- -5'
23620 3' -63.3 NC_005261.1 + 97534 0.73 0.207833
Target:  5'- cGCgAUCGGCGGCCCCGgcgGuGCCGGCcCGu -3'
miRNA:   3'- -CG-UGGUCGUCGGGGCa--C-CGGUCGcGC- -5'
23620 3' -63.3 NC_005261.1 + 123747 0.73 0.207833
Target:  5'- cCGCCAGUAGgccuCCCCGUaaacauGuGCCAGCGCGc -3'
miRNA:   3'- cGUGGUCGUC----GGGGCA------C-CGGUCGCGC- -5'
23620 3' -63.3 NC_005261.1 + 33570 0.73 0.208328
Target:  5'- cCGCCAGCccugccAGCCCCGcgagcaccaggggcgGcGCCGGCGCGg -3'
miRNA:   3'- cGUGGUCG------UCGGGGCa--------------C-CGGUCGCGC- -5'
23620 3' -63.3 NC_005261.1 + 93222 0.73 0.210821
Target:  5'- aGCGCCAGCgcggcaaaaaagcGGCCgCCGUcgccuucgaccggcGcGCCAGCGCGc -3'
miRNA:   3'- -CGUGGUCG-------------UCGG-GGCA--------------C-CGGUCGCGC- -5'
23620 3' -63.3 NC_005261.1 + 133282 0.73 0.21233
Target:  5'- gGCGCCGGCGcccGCCUCGUGGCCgccaaggacgacuGGCuGCu -3'
miRNA:   3'- -CGUGGUCGU---CGGGGCACCGG-------------UCG-CGc -5'
23620 3' -63.3 NC_005261.1 + 118637 0.73 0.212834
Target:  5'- cGCGgCGGCgcucugGGCCCCG-GGCC-GCGCGc -3'
miRNA:   3'- -CGUgGUCG------UCGGGGCaCCGGuCGCGC- -5'
23620 3' -63.3 NC_005261.1 + 59117 0.73 0.217939
Target:  5'- cGCGCgAGCuccccGGCCaCCGacucaGGCCGGCGCGc -3'
miRNA:   3'- -CGUGgUCG-----UCGG-GGCa----CCGGUCGCGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.