miRNA display CGI


Results 81 - 100 of 512 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23620 3' -63.3 NC_005261.1 + 2110 0.73 0.217939
Target:  5'- aGCAgCAGCAcGCCCUGcGcGCCgAGCGCGc -3'
miRNA:   3'- -CGUgGUCGU-CGGGGCaC-CGG-UCGCGC- -5'
23620 3' -63.3 NC_005261.1 + 121851 0.73 0.217939
Target:  5'- gGCGCCAGCAGCCCgCGgcucccGCCgAGcCGCa -3'
miRNA:   3'- -CGUGGUCGUCGGG-GCac----CGG-UC-GCGc -5'
23620 3' -63.3 NC_005261.1 + 59117 0.73 0.217939
Target:  5'- cGCGCgAGCuccccGGCCaCCGacucaGGCCGGCGCGc -3'
miRNA:   3'- -CGUGgUCG-----UCGG-GGCa----CCGGUCGCGC- -5'
23620 3' -63.3 NC_005261.1 + 2391 0.73 0.222622
Target:  5'- cGCGCUGGCGGCgagcgcgCCCGcgGGCCccGCGCGg -3'
miRNA:   3'- -CGUGGUCGUCG-------GGGCa-CCGGu-CGCGC- -5'
23620 3' -63.3 NC_005261.1 + 104334 0.73 0.223148
Target:  5'- cGCGuCCAGCGGCCggCCGUcGCgCAGCGCc -3'
miRNA:   3'- -CGU-GGUCGUCGG--GGCAcCG-GUCGCGc -5'
23620 3' -63.3 NC_005261.1 + 36804 0.73 0.223148
Target:  5'- uGCGCCGGCcggcgcuacguGCCCCGguaugcgGuGCCGGCGCc -3'
miRNA:   3'- -CGUGGUCGu----------CGGGGCa------C-CGGUCGCGc -5'
23620 3' -63.3 NC_005261.1 + 106571 0.73 0.223148
Target:  5'- nGCGCC---GGCCCCGgGGCCGccGCGCGg -3'
miRNA:   3'- -CGUGGucgUCGGGGCaCCGGU--CGCGC- -5'
23620 3' -63.3 NC_005261.1 + 60085 0.72 0.228462
Target:  5'- gGCugCgugGGCAGCagcaCGcUGGCCAGCGCGc -3'
miRNA:   3'- -CGugG---UCGUCGgg--GC-ACCGGUCGCGC- -5'
23620 3' -63.3 NC_005261.1 + 63944 0.72 0.228462
Target:  5'- aGC-CCGgguGCAGCCCCGUGcgcaGCUGGUGCGu -3'
miRNA:   3'- -CGuGGU---CGUCGGGGCAC----CGGUCGCGC- -5'
23620 3' -63.3 NC_005261.1 + 16648 0.72 0.228462
Target:  5'- -aACCAGCAGUCCCc-GGCUGGCaGCGa -3'
miRNA:   3'- cgUGGUCGUCGGGGcaCCGGUCG-CGC- -5'
23620 3' -63.3 NC_005261.1 + 115831 0.72 0.228462
Target:  5'- uGCGCCAGCuugggcgcguuGGCCCgCGcGGCCcccgccgaGGCGCGc -3'
miRNA:   3'- -CGUGGUCG-----------UCGGG-GCaCCGG--------UCGCGC- -5'
23620 3' -63.3 NC_005261.1 + 98136 0.72 0.228462
Target:  5'- gGCACCGGCGGCCgUCGgcggcaaGGCCGcGgGCGg -3'
miRNA:   3'- -CGUGGUCGUCGG-GGCa------CCGGU-CgCGC- -5'
23620 3' -63.3 NC_005261.1 + 76027 0.72 0.233336
Target:  5'- aGCGCCgcgGGC-GCCCCGcgcgccaucagcgUGGCCGGCGgGc -3'
miRNA:   3'- -CGUGG---UCGuCGGGGC-------------ACCGGUCGCgC- -5'
23620 3' -63.3 NC_005261.1 + 109182 0.72 0.233883
Target:  5'- cCGCUAGCAGCgCCGcgucgGGCguGCGCa -3'
miRNA:   3'- cGUGGUCGUCGgGGCa----CCGguCGCGc -5'
23620 3' -63.3 NC_005261.1 + 101113 0.72 0.233883
Target:  5'- cGCGCCuuGGC-GCCCuCGUGGUCcucGCGCGa -3'
miRNA:   3'- -CGUGG--UCGuCGGG-GCACCGGu--CGCGC- -5'
23620 3' -63.3 NC_005261.1 + 1442 0.72 0.233883
Target:  5'- aGCACCAGCGgcggcGCCUCGgcgugcGGCuccagCAGCGCGg -3'
miRNA:   3'- -CGUGGUCGU-----CGGGGCa-----CCG-----GUCGCGC- -5'
23620 3' -63.3 NC_005261.1 + 137863 0.72 0.233883
Target:  5'- gGCGCCccuGguGCuCCCGgGGCCAGCGg- -3'
miRNA:   3'- -CGUGGu--CguCG-GGGCaCCGGUCGCgc -5'
23620 3' -63.3 NC_005261.1 + 35438 0.72 0.233883
Target:  5'- aGCGCCcGCccGCCCCGcgGGUCuaGGCGCGg -3'
miRNA:   3'- -CGUGGuCGu-CGGGGCa-CCGG--UCGCGC- -5'
23620 3' -63.3 NC_005261.1 + 32419 0.72 0.233883
Target:  5'- cCGCCGGCgacgggAGCCCCGccGGCCugGGCGCc -3'
miRNA:   3'- cGUGGUCG------UCGGGGCa-CCGG--UCGCGc -5'
23620 3' -63.3 NC_005261.1 + 41538 0.72 0.233883
Target:  5'- aGCcCCGGCuGgCCCGUGGC-GGUGCGg -3'
miRNA:   3'- -CGuGGUCGuCgGGGCACCGgUCGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.