miRNA display CGI


Results 101 - 120 of 512 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23620 3' -63.3 NC_005261.1 + 180 0.72 0.233883
Target:  5'- gGCGCCccuGguGCuCCCGgGGCCAGCGg- -3'
miRNA:   3'- -CGUGGu--CguCG-GGGCaCCGGUCGCgc -5'
23620 3' -63.3 NC_005261.1 + 29871 0.72 0.233883
Target:  5'- gGCGCCGGC-GCCgCUGccGCCAGCGCc -3'
miRNA:   3'- -CGUGGUCGuCGG-GGCacCGGUCGCGc -5'
23620 3' -63.3 NC_005261.1 + 88141 0.72 0.238297
Target:  5'- cGCGCCGcGCGggggcGCCCCGgccgcgcagccgGGCCGGgGCGa -3'
miRNA:   3'- -CGUGGU-CGU-----CGGGGCa-----------CCGGUCgCGC- -5'
23620 3' -63.3 NC_005261.1 + 88185 0.72 0.239411
Target:  5'- aCGCCGGCGGCgCCGgcgaggcgGGCCgcgccggcaAGCGCGc -3'
miRNA:   3'- cGUGGUCGUCGgGGCa-------CCGG---------UCGCGC- -5'
23620 3' -63.3 NC_005261.1 + 52374 0.72 0.239411
Target:  5'- cGCGgCGGCGGCCCCGgucGUCAGgGCc -3'
miRNA:   3'- -CGUgGUCGUCGGGGCac-CGGUCgCGc -5'
23620 3' -63.3 NC_005261.1 + 64899 0.72 0.239411
Target:  5'- gGguCCAGCAGCg-CGUGGuUCAGCGCGg -3'
miRNA:   3'- -CguGGUCGUCGggGCACC-GGUCGCGC- -5'
23620 3' -63.3 NC_005261.1 + 99558 0.72 0.239411
Target:  5'- cGCGCCAggaaggcgucGUAGCUCUG-GGCCuGCGCGc -3'
miRNA:   3'- -CGUGGU----------CGUCGGGGCaCCGGuCGCGC- -5'
23620 3' -63.3 NC_005261.1 + 68184 0.72 0.239411
Target:  5'- cGCGCC-GCGGgcccccucgcCCCCGccGCCGGCGCGg -3'
miRNA:   3'- -CGUGGuCGUC----------GGGGCacCGGUCGCGC- -5'
23620 3' -63.3 NC_005261.1 + 93353 0.72 0.245049
Target:  5'- cGCGCgCAGCGcGCgCCaGUGcGCCGGCGUGa -3'
miRNA:   3'- -CGUG-GUCGU-CGgGG-CAC-CGGUCGCGC- -5'
23620 3' -63.3 NC_005261.1 + 47738 0.72 0.247334
Target:  5'- aCACCAGCAGCCCgcUGGCgucguccaccccgaGGCGCGu -3'
miRNA:   3'- cGUGGUCGUCGGGgcACCGg-------------UCGCGC- -5'
23620 3' -63.3 NC_005261.1 + 104677 0.72 0.250796
Target:  5'- uGCugCGGCAGCgCCUG-GGCCAcCGCc -3'
miRNA:   3'- -CGugGUCGUCG-GGGCaCCGGUcGCGc -5'
23620 3' -63.3 NC_005261.1 + 34464 0.72 0.250796
Target:  5'- cGgGCCGGgGGCCCCGUaccugcGGCgGGUGCu -3'
miRNA:   3'- -CgUGGUCgUCGGGGCA------CCGgUCGCGc -5'
23620 3' -63.3 NC_005261.1 + 99470 0.72 0.256654
Target:  5'- cGCGgCGGCgcuGGCCgCUGcGGCCAGCGCc -3'
miRNA:   3'- -CGUgGUCG---UCGG-GGCaCCGGUCGCGc -5'
23620 3' -63.3 NC_005261.1 + 84672 0.72 0.256654
Target:  5'- cGCGCCcGCGGCCgCGcacacgaaGCCGGCGCGc -3'
miRNA:   3'- -CGUGGuCGUCGGgGCac------CGGUCGCGC- -5'
23620 3' -63.3 NC_005261.1 + 22654 0.72 0.256654
Target:  5'- cGCGCUGGCGGCgCC-UGGgCGGCGCc -3'
miRNA:   3'- -CGUGGUCGUCGgGGcACCgGUCGCGc -5'
23620 3' -63.3 NC_005261.1 + 76128 0.72 0.256654
Target:  5'- cGCGCCGGC-GCCCgucguggagguCGUGGC-GGCGCa -3'
miRNA:   3'- -CGUGGUCGuCGGG-----------GCACCGgUCGCGc -5'
23620 3' -63.3 NC_005261.1 + 64601 0.72 0.256654
Target:  5'- uGCugCAGCAGCCgCCGcgcgcgaaGGCCGGCa-- -3'
miRNA:   3'- -CGugGUCGUCGG-GGCa-------CCGGUCGcgc -5'
23620 3' -63.3 NC_005261.1 + 77333 0.72 0.260821
Target:  5'- cCGCCGGCGccGCCCCccgccaugagcgcaGUgcaccaGGCCAGCGCGu -3'
miRNA:   3'- cGUGGUCGU--CGGGG--------------CA------CCGGUCGCGC- -5'
23620 3' -63.3 NC_005261.1 + 122013 0.72 0.260821
Target:  5'- gGCAUCAGCGGCCCCauaaagugcgcgaaGcGGCaCuGCGCGc -3'
miRNA:   3'- -CGUGGUCGUCGGGG--------------CaCCG-GuCGCGC- -5'
23620 3' -63.3 NC_005261.1 + 93038 0.72 0.262021
Target:  5'- cGCGCaCAcGCGGCCCuCGaagcuguucucgcUGGCCAcGCGCGc -3'
miRNA:   3'- -CGUG-GU-CGUCGGG-GC-------------ACCGGU-CGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.