miRNA display CGI


Results 21 - 40 of 512 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23620 3' -63.3 NC_005261.1 + 69006 0.66 0.560395
Target:  5'- gGCGCC-GCGGCUUCGuUGGCgAGUccgugGCGg -3'
miRNA:   3'- -CGUGGuCGUCGGGGC-ACCGgUCG-----CGC- -5'
23620 3' -63.3 NC_005261.1 + 82161 0.66 0.560395
Target:  5'- cGCGCCAGCaAGCgCgGcgcGGaaGGCGCGg -3'
miRNA:   3'- -CGUGGUCG-UCGgGgCa--CCggUCGCGC- -5'
23620 3' -63.3 NC_005261.1 + 109339 0.66 0.559426
Target:  5'- cGCGgggUCGGCGGCCgCGUcGCCguccagccgcucgAGCGCGg -3'
miRNA:   3'- -CGU---GGUCGUCGGgGCAcCGG-------------UCGCGC- -5'
23620 3' -63.3 NC_005261.1 + 32157 0.66 0.559426
Target:  5'- cGCGCCGcuGCGGCCgguguaCC-UGGCCugcgggcGGCGCGc -3'
miRNA:   3'- -CGUGGU--CGUCGG------GGcACCGG-------UCGCGC- -5'
23620 3' -63.3 NC_005261.1 + 37592 0.66 0.55749
Target:  5'- gGUACCAcacggccggucccuGCAGCUCCGgugaUGGCCucuacgccuagcGGCGCc -3'
miRNA:   3'- -CGUGGU--------------CGUCGGGGC----ACCGG------------UCGCGc -5'
23620 3' -63.3 NC_005261.1 + 49984 0.66 0.55749
Target:  5'- gGCGCC-GCcgucgucccccccgAGCCgCGccGCCAGCGCGc -3'
miRNA:   3'- -CGUGGuCG--------------UCGGgGCacCGGUCGCGC- -5'
23620 3' -63.3 NC_005261.1 + 15176 0.66 0.550728
Target:  5'- aGCGgCGGCGGCgCCCGcGggaaacgccGCCAucGCGCGg -3'
miRNA:   3'- -CGUgGUCGUCG-GGGCaC---------CGGU--CGCGC- -5'
23620 3' -63.3 NC_005261.1 + 29187 0.66 0.550728
Target:  5'- gGCGCCcucgccGCGGCgCCCGc-GCgGGCGCGc -3'
miRNA:   3'- -CGUGGu-----CGUCG-GGGCacCGgUCGCGC- -5'
23620 3' -63.3 NC_005261.1 + 38692 0.66 0.550728
Target:  5'- cGCGCUGGCcgGGCCCaagccGGCCAGgccCGCGc -3'
miRNA:   3'- -CGUGGUCG--UCGGGgca--CCGGUC---GCGC- -5'
23620 3' -63.3 NC_005261.1 + 46542 0.66 0.550728
Target:  5'- cGCGCUGGCAGUcguCCCGcagcGCgAGCGCu -3'
miRNA:   3'- -CGUGGUCGUCG---GGGCac--CGgUCGCGc -5'
23620 3' -63.3 NC_005261.1 + 52671 0.66 0.550728
Target:  5'- cGCACUucgAGCgGGCCCUGcucGCgGGCGCGc -3'
miRNA:   3'- -CGUGG---UCG-UCGGGGCac-CGgUCGCGC- -5'
23620 3' -63.3 NC_005261.1 + 81259 0.66 0.550728
Target:  5'- aGCGCgAGUucuCCCCGgccGCCuGCGCGa -3'
miRNA:   3'- -CGUGgUCGuc-GGGGCac-CGGuCGCGC- -5'
23620 3' -63.3 NC_005261.1 + 93751 0.66 0.550728
Target:  5'- cGUACuCGGCGGCCCgCGcGcGCgCGGCGUc -3'
miRNA:   3'- -CGUG-GUCGUCGGG-GCaC-CG-GUCGCGc -5'
23620 3' -63.3 NC_005261.1 + 101071 0.66 0.550728
Target:  5'- aGCcCCAGCAccacGCCCgCGgccGCCugcAGCGCGg -3'
miRNA:   3'- -CGuGGUCGU----CGGG-GCac-CGG---UCGCGC- -5'
23620 3' -63.3 NC_005261.1 + 101665 0.66 0.550728
Target:  5'- aGCAUCuGC-GCCUCGUaGGCCgAGCcgGCGa -3'
miRNA:   3'- -CGUGGuCGuCGGGGCA-CCGG-UCG--CGC- -5'
23620 3' -63.3 NC_005261.1 + 121373 0.66 0.550728
Target:  5'- cGUACUgcaGGC-GCCCCGcGGCggCGGCGCc -3'
miRNA:   3'- -CGUGG---UCGuCGGGGCaCCG--GUCGCGc -5'
23620 3' -63.3 NC_005261.1 + 29411 0.66 0.550728
Target:  5'- cGCGCUacgcGGCGGCCgCGgGGCCcGCGg- -3'
miRNA:   3'- -CGUGG----UCGUCGGgGCaCCGGuCGCgc -5'
23620 3' -63.3 NC_005261.1 + 32302 0.66 0.550728
Target:  5'- gGCGCCGcccccGCcGCCgCCGcGGCCgcGGCGCc -3'
miRNA:   3'- -CGUGGU-----CGuCGG-GGCaCCGG--UCGCGc -5'
23620 3' -63.3 NC_005261.1 + 59256 0.66 0.550728
Target:  5'- gGCGCCGGC-GCCaCgCGUcGCaCGGCGUGu -3'
miRNA:   3'- -CGUGGUCGuCGG-G-GCAcCG-GUCGCGC- -5'
23620 3' -63.3 NC_005261.1 + 6433 0.66 0.550728
Target:  5'- cGCGagGGCGGUCCgGgGGCCGGC-CGg -3'
miRNA:   3'- -CGUggUCGUCGGGgCaCCGGUCGcGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.