miRNA display CGI


Results 41 - 60 of 512 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23620 3' -63.3 NC_005261.1 + 121373 0.66 0.550728
Target:  5'- cGUACUgcaGGC-GCCCCGcGGCggCGGCGCc -3'
miRNA:   3'- -CGUGG---UCGuCGGGGCaCCG--GUCGCGc -5'
23620 3' -63.3 NC_005261.1 + 101665 0.66 0.550728
Target:  5'- aGCAUCuGC-GCCUCGUaGGCCgAGCcgGCGa -3'
miRNA:   3'- -CGUGGuCGuCGGGGCA-CCGG-UCG--CGC- -5'
23620 3' -63.3 NC_005261.1 + 101071 0.66 0.550728
Target:  5'- aGCcCCAGCAccacGCCCgCGgccGCCugcAGCGCGg -3'
miRNA:   3'- -CGuGGUCGU----CGGG-GCac-CGG---UCGCGC- -5'
23620 3' -63.3 NC_005261.1 + 93751 0.66 0.550728
Target:  5'- cGUACuCGGCGGCCCgCGcGcGCgCGGCGUc -3'
miRNA:   3'- -CGUG-GUCGUCGGG-GCaC-CG-GUCGCGc -5'
23620 3' -63.3 NC_005261.1 + 70680 0.66 0.549764
Target:  5'- cGCACCucCAGCCaggCGUccagcgcGGCCcGCGCGg -3'
miRNA:   3'- -CGUGGucGUCGGg--GCA-------CCGGuCGCGC- -5'
23620 3' -63.3 NC_005261.1 + 4850 0.66 0.541113
Target:  5'- cGCGCC-GCAGCCUCaaGGgCGGCGg- -3'
miRNA:   3'- -CGUGGuCGUCGGGGcaCCgGUCGCgc -5'
23620 3' -63.3 NC_005261.1 + 56091 0.66 0.541113
Target:  5'- cGCuacuuCCAGCGGCUCC-UGcGCgAGCgGCGg -3'
miRNA:   3'- -CGu----GGUCGUCGGGGcAC-CGgUCG-CGC- -5'
23620 3' -63.3 NC_005261.1 + 98670 0.66 0.541113
Target:  5'- gGCGagGGCgGGCUCCGccggGGCCggaGGCGCGg -3'
miRNA:   3'- -CGUggUCG-UCGGGGCa---CCGG---UCGCGC- -5'
23620 3' -63.3 NC_005261.1 + 101341 0.66 0.541113
Target:  5'- cGCGCCugcuGCAGCCacuccaCCGcGGCCacguccagcuccGGCGCc -3'
miRNA:   3'- -CGUGGu---CGUCGG------GGCaCCGG------------UCGCGc -5'
23620 3' -63.3 NC_005261.1 + 126587 0.66 0.541113
Target:  5'- cGCGgCAGUAGCCCaaaaacaGGCCcGCGUa -3'
miRNA:   3'- -CGUgGUCGUCGGGgca----CCGGuCGCGc -5'
23620 3' -63.3 NC_005261.1 + 103823 0.66 0.541113
Target:  5'- cCGCCAGCAGCUCgCGgaggagcucGCCcuuGCGCGc -3'
miRNA:   3'- cGUGGUCGUCGGG-GCac-------CGGu--CGCGC- -5'
23620 3' -63.3 NC_005261.1 + 113888 0.66 0.541113
Target:  5'- cCugUAGCGGCgaCGcGGCgGGCGCGa -3'
miRNA:   3'- cGugGUCGUCGggGCaCCGgUCGCGC- -5'
23620 3' -63.3 NC_005261.1 + 132913 0.66 0.541113
Target:  5'- gGCGCCgagcGGCGGCUCCugcccuucuacGUGGUCcccgAGCGCu -3'
miRNA:   3'- -CGUGG----UCGUCGGGG-----------CACCGG----UCGCGc -5'
23620 3' -63.3 NC_005261.1 + 31877 0.66 0.541113
Target:  5'- gGCGCCuucGCGcGCgCCGaGGCCGcuuacGCGCGg -3'
miRNA:   3'- -CGUGGu--CGU-CGgGGCaCCGGU-----CGCGC- -5'
23620 3' -63.3 NC_005261.1 + 65119 0.66 0.540155
Target:  5'- uGCGCCAGUAGCUggucaCGcacUGcaucaccagccgcGCCAGCGCGc -3'
miRNA:   3'- -CGUGGUCGUCGGg----GC---AC-------------CGGUCGCGC- -5'
23620 3' -63.3 NC_005261.1 + 73918 0.66 0.540155
Target:  5'- -aGCCGGCGGCCCgacugCGUGuGCCugcuccggcuugcAGaCGCGg -3'
miRNA:   3'- cgUGGUCGUCGGG-----GCAC-CGG-------------UC-GCGC- -5'
23620 3' -63.3 NC_005261.1 + 55032 0.66 0.537283
Target:  5'- -aGCCGcCGGCCCCGcgcagcugcgcggGGCCGGCGa- -3'
miRNA:   3'- cgUGGUcGUCGGGGCa------------CCGGUCGCgc -5'
23620 3' -63.3 NC_005261.1 + 47034 0.66 0.535371
Target:  5'- cGCGaCGGCGGCgCUGUccagaaagucccacgGGCCgAGCGCGu -3'
miRNA:   3'- -CGUgGUCGUCGgGGCA---------------CCGG-UCGCGC- -5'
23620 3' -63.3 NC_005261.1 + 96703 0.66 0.535371
Target:  5'- gGCGacCCAGCAGcgaguuggcgggcacCaCCCG-GGCgCGGCGCGa -3'
miRNA:   3'- -CGU--GGUCGUC---------------G-GGGCaCCG-GUCGCGC- -5'
23620 3' -63.3 NC_005261.1 + 55210 0.66 0.531555
Target:  5'- cGCGgauCCGGCGGCCCgaGgcGGCgAGgGCGg -3'
miRNA:   3'- -CGU---GGUCGUCGGGg-Ca-CCGgUCgCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.