miRNA display CGI


Results 61 - 80 of 512 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23620 3' -63.3 NC_005261.1 + 14013 0.66 0.531555
Target:  5'- cCGCuCGGUgAGCUCUGcgaUGGCCAGCGgGg -3'
miRNA:   3'- cGUG-GUCG-UCGGGGC---ACCGGUCGCgC- -5'
23620 3' -63.3 NC_005261.1 + 23464 0.66 0.531555
Target:  5'- gGCGCCA--GGCCCgCGgcGGCgAGUGCGc -3'
miRNA:   3'- -CGUGGUcgUCGGG-GCa-CCGgUCGCGC- -5'
23620 3' -63.3 NC_005261.1 + 32219 0.66 0.531555
Target:  5'- aGCuGCCGGCcGCggCgGUGGCCuucuGCGCGg -3'
miRNA:   3'- -CG-UGGUCGuCGg-GgCACCGGu---CGCGC- -5'
23620 3' -63.3 NC_005261.1 + 105952 0.66 0.531555
Target:  5'- cGCGCC-GUcgauGGCCUCGgcgcCCAGCGCGg -3'
miRNA:   3'- -CGUGGuCG----UCGGGGCacc-GGUCGCGC- -5'
23620 3' -63.3 NC_005261.1 + 120003 0.66 0.531555
Target:  5'- gGCGCCGGCuacGCggCCGUGuGCC-GCGCc -3'
miRNA:   3'- -CGUGGUCGu--CGg-GGCAC-CGGuCGCGc -5'
23620 3' -63.3 NC_005261.1 + 130249 0.66 0.531555
Target:  5'- cGCGCCAGCGGCUCguacugCGgGGCgucccGCGCGc -3'
miRNA:   3'- -CGUGGUCGUCGGG------GCaCCGgu---CGCGC- -5'
23620 3' -63.3 NC_005261.1 + 55210 0.66 0.531555
Target:  5'- cGCGgauCCGGCGGCCCgaGgcGGCgAGgGCGg -3'
miRNA:   3'- -CGU---GGUCGUCGGGg-Ca-CCGgUCgCGC- -5'
23620 3' -63.3 NC_005261.1 + 62685 0.66 0.531555
Target:  5'- cCGCCAGCuGCaCgCGccGGCgCAGCGUGg -3'
miRNA:   3'- cGUGGUCGuCG-GgGCa-CCG-GUCGCGC- -5'
23620 3' -63.3 NC_005261.1 + 57496 0.66 0.525849
Target:  5'- cGCgACgGGCAcGUCCCGgcggcgGGCCuucuuccacaggcacGGCGCGg -3'
miRNA:   3'- -CG-UGgUCGU-CGGGGCa-----CCGG---------------UCGCGC- -5'
23620 3' -63.3 NC_005261.1 + 82795 0.66 0.525849
Target:  5'- aGCGCCAGCu-CCgCCGcGGCCAccugcagccggugccGCGCu -3'
miRNA:   3'- -CGUGGUCGucGG-GGCaCCGGU---------------CGCGc -5'
23620 3' -63.3 NC_005261.1 + 120631 0.66 0.525849
Target:  5'- -uGCUgguGGCGGCCCUGUGccugcggcgcaaggcGCgGGCGCGc -3'
miRNA:   3'- cgUGG---UCGUCGGGGCAC---------------CGgUCGCGC- -5'
23620 3' -63.3 NC_005261.1 + 31713 0.66 0.522058
Target:  5'- aCGCC-GUGGaCCCCGcgaacUGGCC-GCGCGa -3'
miRNA:   3'- cGUGGuCGUC-GGGGC-----ACCGGuCGCGC- -5'
23620 3' -63.3 NC_005261.1 + 35928 0.66 0.522058
Target:  5'- cGCGCC-GCAGCCCa---GCgGGCGCc -3'
miRNA:   3'- -CGUGGuCGUCGGGgcacCGgUCGCGc -5'
23620 3' -63.3 NC_005261.1 + 55838 0.66 0.522058
Target:  5'- -gGCCGGgucGUCCCGguccGcGCCGGCGCGg -3'
miRNA:   3'- cgUGGUCgu-CGGGGCa---C-CGGUCGCGC- -5'
23620 3' -63.3 NC_005261.1 + 69662 0.66 0.522058
Target:  5'- -aACCGGCGGCUggggGUGGCCGGCa-- -3'
miRNA:   3'- cgUGGUCGUCGGgg--CACCGGUCGcgc -5'
23620 3' -63.3 NC_005261.1 + 73462 0.66 0.522058
Target:  5'- cGCGuCC-GCGcGCCCCcccugGGCCgcGGCGCGg -3'
miRNA:   3'- -CGU-GGuCGU-CGGGGca---CCGG--UCGCGC- -5'
23620 3' -63.3 NC_005261.1 + 108399 0.66 0.522058
Target:  5'- cGCuCCAGCAGCCgCGccaccGcGCCuGCGUGc -3'
miRNA:   3'- -CGuGGUCGUCGGgGCa----C-CGGuCGCGC- -5'
23620 3' -63.3 NC_005261.1 + 135073 0.66 0.522058
Target:  5'- cGCuuuCCGGCGGCgggCUCGcGGCCcggcggcggAGCGCGa -3'
miRNA:   3'- -CGu--GGUCGUCG---GGGCaCCGG---------UCGCGC- -5'
23620 3' -63.3 NC_005261.1 + 42241 0.66 0.522058
Target:  5'- cGCGCgCAGC-GCCUCGaacuGCCcGCGCGa -3'
miRNA:   3'- -CGUG-GUCGuCGGGGCac--CGGuCGCGC- -5'
23620 3' -63.3 NC_005261.1 + 121239 0.66 0.522058
Target:  5'- gGCGCCGGcCAGCUCCGacucggGGuCCGcCGCa -3'
miRNA:   3'- -CGUGGUC-GUCGGGGCa-----CC-GGUcGCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.