miRNA display CGI


Results 81 - 100 of 512 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23620 3' -63.3 NC_005261.1 + 108399 0.66 0.522058
Target:  5'- cGCuCCAGCAGCCgCGccaccGcGCCuGCGUGc -3'
miRNA:   3'- -CGuGGUCGUCGGgGCa----C-CGGuCGCGC- -5'
23620 3' -63.3 NC_005261.1 + 135073 0.66 0.522058
Target:  5'- cGCuuuCCGGCGGCgggCUCGcGGCCcggcggcggAGCGCGa -3'
miRNA:   3'- -CGu--GGUCGUCG---GGGCaCCGG---------UCGCGC- -5'
23620 3' -63.3 NC_005261.1 + 42241 0.66 0.522058
Target:  5'- cGCGCgCAGC-GCCUCGaacuGCCcGCGCGa -3'
miRNA:   3'- -CGUG-GUCGuCGGGGCac--CGGuCGCGC- -5'
23620 3' -63.3 NC_005261.1 + 87426 0.66 0.522058
Target:  5'- cGCGCCGGCgaaGGCgCCGaaGCCgaAGCGCc -3'
miRNA:   3'- -CGUGGUCG---UCGgGGCacCGG--UCGCGc -5'
23620 3' -63.3 NC_005261.1 + 121947 0.66 0.521112
Target:  5'- aGCGCCAGCuugaaccAGCUcgCCGUGccgcgcuCCAGCGCc -3'
miRNA:   3'- -CGUGGUCG-------UCGG--GGCACc------GGUCGCGc -5'
23620 3' -63.3 NC_005261.1 + 13117 0.66 0.516392
Target:  5'- gGCGUCGGCGGCCgCGgGGCgcguguggucggugaCGGCGCGc -3'
miRNA:   3'- -CGUGGUCGUCGGgGCaCCG---------------GUCGCGC- -5'
23620 3' -63.3 NC_005261.1 + 97184 0.66 0.516392
Target:  5'- gGCGCCGGCcgggccgcggccggaAGCgCCGcGGCCAcgcucggagGCGCu -3'
miRNA:   3'- -CGUGGUCG---------------UCGgGGCaCCGGU---------CGCGc -5'
23620 3' -63.3 NC_005261.1 + 38058 0.66 0.512628
Target:  5'- cCACgGGCAgGCCCaCGgccUGGCCuucAGCGUGa -3'
miRNA:   3'- cGUGgUCGU-CGGG-GC---ACCGG---UCGCGC- -5'
23620 3' -63.3 NC_005261.1 + 107466 0.66 0.512628
Target:  5'- gGCACC-GCAGUCCCGcGcCCA-CGCGa -3'
miRNA:   3'- -CGUGGuCGUCGGGGCaCcGGUcGCGC- -5'
23620 3' -63.3 NC_005261.1 + 83106 0.66 0.512628
Target:  5'- aGCGCC-GCcGCCgCCGccGCCAGcCGCGc -3'
miRNA:   3'- -CGUGGuCGuCGG-GGCacCGGUC-GCGC- -5'
23620 3' -63.3 NC_005261.1 + 127618 0.66 0.512628
Target:  5'- aCGCUAGCGGCC----GGCCGGaCGCGa -3'
miRNA:   3'- cGUGGUCGUCGGggcaCCGGUC-GCGC- -5'
23620 3' -63.3 NC_005261.1 + 129819 0.66 0.512628
Target:  5'- cGCGCCcuGC-GCCCgGaUGcCCAGCGCGc -3'
miRNA:   3'- -CGUGGu-CGuCGGGgC-ACcGGUCGCGC- -5'
23620 3' -63.3 NC_005261.1 + 5266 0.66 0.512628
Target:  5'- cCGCCGGgAGaCgCCaUGGCCGGcCGCGg -3'
miRNA:   3'- cGUGGUCgUC-GgGGcACCGGUC-GCGC- -5'
23620 3' -63.3 NC_005261.1 + 46255 0.66 0.512628
Target:  5'- cGCGgCGGCGGCCgcgaCCGUGuccCCGGgGCGc -3'
miRNA:   3'- -CGUgGUCGUCGG----GGCACc--GGUCgCGC- -5'
23620 3' -63.3 NC_005261.1 + 75461 0.66 0.512628
Target:  5'- -gGCCAGUuccaGGCgCCG-GGCggCGGCGCGg -3'
miRNA:   3'- cgUGGUCG----UCGgGGCaCCG--GUCGCGC- -5'
23620 3' -63.3 NC_005261.1 + 84641 0.66 0.512628
Target:  5'- cCACCAGCGuguuGUCCC--GGCUGGCGCc -3'
miRNA:   3'- cGUGGUCGU----CGGGGcaCCGGUCGCGc -5'
23620 3' -63.3 NC_005261.1 + 90993 0.66 0.512628
Target:  5'- aGUACCu-CGGCCUCGUcGCCGGCgGCa -3'
miRNA:   3'- -CGUGGucGUCGGGGCAcCGGUCG-CGc -5'
23620 3' -63.3 NC_005261.1 + 134994 0.66 0.512628
Target:  5'- cCGCCGGgGcGCCCC-UGGCgCGGCGgGc -3'
miRNA:   3'- cGUGGUCgU-CGGGGcACCG-GUCGCgC- -5'
23620 3' -63.3 NC_005261.1 + 118937 0.66 0.509813
Target:  5'- gGCGCCGcgcggcuggccGCGGCgCaCGUGGCCAagguccugcacgccGCGCu -3'
miRNA:   3'- -CGUGGU-----------CGUCGgG-GCACCGGU--------------CGCGc -5'
23620 3' -63.3 NC_005261.1 + 40657 0.66 0.508876
Target:  5'- aGCGucgaCAGCAGCUCCGcgacgccgucgggGaGCCGGCGCc -3'
miRNA:   3'- -CGUg---GUCGUCGGGGCa------------C-CGGUCGCGc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.