miRNA display CGI


Results 101 - 120 of 512 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23620 3' -63.3 NC_005261.1 + 1576 0.67 0.507004
Target:  5'- cGCGCCgagcccccagcgguuGGCGGCgCgGUGGCUGGcCGCc -3'
miRNA:   3'- -CGUGG---------------UCGUCGgGgCACCGGUC-GCGc -5'
23620 3' -63.3 NC_005261.1 + 87064 0.67 0.507004
Target:  5'- aGCGCCAccGCGGCCgggcccagcacguagCCGUGcagCAGCGCGc -3'
miRNA:   3'- -CGUGGU--CGUCGG---------------GGCACcg-GUCGCGC- -5'
23620 3' -63.3 NC_005261.1 + 113303 0.67 0.503269
Target:  5'- cGCugCcGCGGgCCUG-GGCCcggcuGCGCGa -3'
miRNA:   3'- -CGugGuCGUCgGGGCaCCGGu----CGCGC- -5'
23620 3' -63.3 NC_005261.1 + 95604 0.67 0.503269
Target:  5'- cGCACCGGcCGGCUgC-UGGaCC-GCGCGg -3'
miRNA:   3'- -CGUGGUC-GUCGGgGcACC-GGuCGCGC- -5'
23620 3' -63.3 NC_005261.1 + 93456 0.67 0.503269
Target:  5'- aGCACCGGCcccAGCgCgGU-GCCGGgGCGc -3'
miRNA:   3'- -CGUGGUCG---UCGgGgCAcCGGUCgCGC- -5'
23620 3' -63.3 NC_005261.1 + 58027 0.67 0.503269
Target:  5'- cGCGgCGGCAGCUCCaGggagcgcGGCC-GCGUGa -3'
miRNA:   3'- -CGUgGUCGUCGGGG-Ca------CCGGuCGCGC- -5'
23620 3' -63.3 NC_005261.1 + 37757 0.67 0.503269
Target:  5'- gGCGCCGcGCcGCCCaagcGCCGGCGCc -3'
miRNA:   3'- -CGUGGU-CGuCGGGgcacCGGUCGCGc -5'
23620 3' -63.3 NC_005261.1 + 28840 0.67 0.503269
Target:  5'- cGCgGCUgaGGCGGCCgUCGUGGCCGcCGCc -3'
miRNA:   3'- -CG-UGG--UCGUCGG-GGCACCGGUcGCGc -5'
23620 3' -63.3 NC_005261.1 + 2445 0.67 0.503269
Target:  5'- -gGCCAGC-GCCUCGgggucgaaGGCgAGCGCc -3'
miRNA:   3'- cgUGGUCGuCGGGGCa-------CCGgUCGCGc -5'
23620 3' -63.3 NC_005261.1 + 11049 0.67 0.503269
Target:  5'- gGCACUcgGGCGccGCCCaggCGccGCCAGCGCGu -3'
miRNA:   3'- -CGUGG--UCGU--CGGG---GCacCGGUCGCGC- -5'
23620 3' -63.3 NC_005261.1 + 1504 0.67 0.503269
Target:  5'- cGCgGCCGGCAGCUcgUCG-GGCgccagcucCAGCGCGc -3'
miRNA:   3'- -CG-UGGUCGUCGG--GGCaCCG--------GUCGCGC- -5'
23620 3' -63.3 NC_005261.1 + 42824 0.67 0.503269
Target:  5'- cGCGCCGGCcggAGCaCCUGggcgaUGGCagAGUGCGa -3'
miRNA:   3'- -CGUGGUCG---UCG-GGGC-----ACCGg-UCGCGC- -5'
23620 3' -63.3 NC_005261.1 + 91471 0.67 0.503269
Target:  5'- cGCGCCucccAGCGGCgCCGccgcGGCCGccgcccgccccGCGCGc -3'
miRNA:   3'- -CGUGG----UCGUCGgGGCa---CCGGU-----------CGCGC- -5'
23620 3' -63.3 NC_005261.1 + 15893 0.67 0.503269
Target:  5'- cGCGCgGGCGcuuuaucucccGCCCCGcgcagccggGGCCGGgGCc -3'
miRNA:   3'- -CGUGgUCGU-----------CGGGGCa--------CCGGUCgCGc -5'
23620 3' -63.3 NC_005261.1 + 130105 0.67 0.503269
Target:  5'- cGCGCCAGCGacugcGCCuuGgcgaGCCGccGCGCGc -3'
miRNA:   3'- -CGUGGUCGU-----CGGggCac--CGGU--CGCGC- -5'
23620 3' -63.3 NC_005261.1 + 108739 0.67 0.503269
Target:  5'- cCAgCGGCGGCgCCGcGGCguccgCGGCGCGc -3'
miRNA:   3'- cGUgGUCGUCGgGGCaCCG-----GUCGCGC- -5'
23620 3' -63.3 NC_005261.1 + 74207 0.67 0.503269
Target:  5'- uCGCCAGCAacgcgccgcGCCUCGaGGCUauaauagccgGGCGCGc -3'
miRNA:   3'- cGUGGUCGU---------CGGGGCaCCGG----------UCGCGC- -5'
23620 3' -63.3 NC_005261.1 + 69616 0.67 0.503269
Target:  5'- cGCGCCcGCcGCCCgGcacGGCguGCGCu -3'
miRNA:   3'- -CGUGGuCGuCGGGgCa--CCGguCGCGc -5'
23620 3' -63.3 NC_005261.1 + 65527 0.67 0.503269
Target:  5'- uCACCcagcGCGGCCgCGcgGGCagCAGCGCGu -3'
miRNA:   3'- cGUGGu---CGUCGGgGCa-CCG--GUCGCGC- -5'
23620 3' -63.3 NC_005261.1 + 130774 0.67 0.503269
Target:  5'- aGCAgCUGGC-GCCCCGcgcUGGCCGcacCGCGg -3'
miRNA:   3'- -CGU-GGUCGuCGGGGC---ACCGGUc--GCGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.