miRNA display CGI


Results 121 - 140 of 512 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23620 3' -63.3 NC_005261.1 + 65527 0.67 0.503269
Target:  5'- uCACCcagcGCGGCCgCGcgGGCagCAGCGCGu -3'
miRNA:   3'- cGUGGu---CGUCGGgGCa-CCG--GUCGCGC- -5'
23620 3' -63.3 NC_005261.1 + 132632 0.67 0.500476
Target:  5'- gGCGCCgaggacgcgggcgcGGCGGCCCUagcGGCC-GCGUGu -3'
miRNA:   3'- -CGUGG--------------UCGUCGGGGca-CCGGuCGCGC- -5'
23620 3' -63.3 NC_005261.1 + 33515 0.67 0.500476
Target:  5'- gGCGgCGGCGGCaCCGcUGGCCccgggagcaccaggGGCGCc -3'
miRNA:   3'- -CGUgGUCGUCGgGGC-ACCGG--------------UCGCGc -5'
23620 3' -63.3 NC_005261.1 + 88565 0.67 0.500476
Target:  5'- aGCGCCGGCGacgcgucccgcuucGCCgCCGaGGCCcggcccggcGGCGCc -3'
miRNA:   3'- -CGUGGUCGU--------------CGG-GGCaCCGG---------UCGCGc -5'
23620 3' -63.3 NC_005261.1 + 107885 0.67 0.497689
Target:  5'- cGCGCCcGCGGCCCgcuuguccgcggccgCGgccucGGCCAcgagugccGCGCGg -3'
miRNA:   3'- -CGUGGuCGUCGGG---------------GCa----CCGGU--------CGCGC- -5'
23620 3' -63.3 NC_005261.1 + 32018 0.67 0.493985
Target:  5'- aGUACCGGCAGCgcgugcugCCGcGGCUcgacgGGCGCa -3'
miRNA:   3'- -CGUGGUCGUCGg-------GGCaCCGG-----UCGCGc -5'
23620 3' -63.3 NC_005261.1 + 35498 0.67 0.493985
Target:  5'- gGCACCcGCccuuGCCCCGcUGG-CAGCgGCa -3'
miRNA:   3'- -CGUGGuCGu---CGGGGC-ACCgGUCG-CGc -5'
23620 3' -63.3 NC_005261.1 + 91172 0.67 0.493985
Target:  5'- -gGgCGGCAGCuCCCGccgGGCUucGCGCGc -3'
miRNA:   3'- cgUgGUCGUCG-GGGCa--CCGGu-CGCGC- -5'
23620 3' -63.3 NC_005261.1 + 93695 0.67 0.493985
Target:  5'- gGCGCCGGCGGgugccucuuccuCCUCGUcgucgucggcGGCggCAGCGCGc -3'
miRNA:   3'- -CGUGGUCGUC------------GGGGCA----------CCG--GUCGCGC- -5'
23620 3' -63.3 NC_005261.1 + 131779 0.67 0.493985
Target:  5'- cGCGCC-GCugGGCCCCGacGCC-GCGCc -3'
miRNA:   3'- -CGUGGuCG--UCGGGGCacCGGuCGCGc -5'
23620 3' -63.3 NC_005261.1 + 66258 0.67 0.490293
Target:  5'- uCACCAGCacgccguccaccgGGCgCCCGcGGCUgucgcagugcgucaGGCGCGg -3'
miRNA:   3'- cGUGGUCG-------------UCG-GGGCaCCGG--------------UCGCGC- -5'
23620 3' -63.3 NC_005261.1 + 94146 0.67 0.488452
Target:  5'- cCACCAGCgucAGCgCCCG-GGucgcgaaggcgcccaCCAGCGUGg -3'
miRNA:   3'- cGUGGUCG---UCG-GGGCaCC---------------GGUCGCGC- -5'
23620 3' -63.3 NC_005261.1 + 19529 0.67 0.48478
Target:  5'- cGCAgCA-CGGCCCgCGUcaccGCCAGCGCc -3'
miRNA:   3'- -CGUgGUcGUCGGG-GCAc---CGGUCGCGc -5'
23620 3' -63.3 NC_005261.1 + 62063 0.67 0.48478
Target:  5'- cGCAgCAGCuGCCCC---GCCucGCGCGa -3'
miRNA:   3'- -CGUgGUCGuCGGGGcacCGGu-CGCGC- -5'
23620 3' -63.3 NC_005261.1 + 77929 0.67 0.48478
Target:  5'- cGgGCCGGCuaccccuacGGCCCCGccuucgcGGCC-GCGCa -3'
miRNA:   3'- -CgUGGUCG---------UCGGGGCa------CCGGuCGCGc -5'
23620 3' -63.3 NC_005261.1 + 121481 0.67 0.48478
Target:  5'- cGUACCGGCuGCCgCCacgGGgCGGCGgGg -3'
miRNA:   3'- -CGUGGUCGuCGG-GGca-CCgGUCGCgC- -5'
23620 3' -63.3 NC_005261.1 + 120 0.67 0.48478
Target:  5'- cGCGCCGGCGccGCCCC-UGGUgcuCGCGg -3'
miRNA:   3'- -CGUGGUCGU--CGGGGcACCGgucGCGC- -5'
23620 3' -63.3 NC_005261.1 + 3740 0.67 0.48478
Target:  5'- cGCGCCGGCGGCgCaCCGcgccGCCucuAGCGCc -3'
miRNA:   3'- -CGUGGUCGUCG-G-GGCac--CGG---UCGCGc -5'
23620 3' -63.3 NC_005261.1 + 137803 0.67 0.48478
Target:  5'- cGCGCCGGCGccGCCCC-UGGUgcuCGCGg -3'
miRNA:   3'- -CGUGGUCGU--CGGGGcACCGgucGCGC- -5'
23620 3' -63.3 NC_005261.1 + 134866 0.67 0.475657
Target:  5'- gGCGCCcGCGcCCCCGcgGGCCccugcuGUGCGu -3'
miRNA:   3'- -CGUGGuCGUcGGGGCa-CCGGu-----CGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.