miRNA display CGI


Results 1 - 20 of 512 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23620 3' -63.3 NC_005261.1 + 120 0.67 0.48478
Target:  5'- cGCGCCGGCGccGCCCC-UGGUgcuCGCGg -3'
miRNA:   3'- -CGUGGUCGU--CGGGGcACCGgucGCGC- -5'
23620 3' -63.3 NC_005261.1 + 180 0.72 0.233883
Target:  5'- gGCGCCccuGguGCuCCCGgGGCCAGCGg- -3'
miRNA:   3'- -CGUGGu--CguCG-GGGCaCCGGUCGCgc -5'
23620 3' -63.3 NC_005261.1 + 337 0.71 0.287631
Target:  5'- gGCugCGGCGGCCCgcaGcCCGGCGCGg -3'
miRNA:   3'- -CGugGUCGUCGGGgcaCcGGUCGCGC- -5'
23620 3' -63.3 NC_005261.1 + 1179 0.74 0.171377
Target:  5'- cGCGCC-GCGGCCggggCCGgGGCCGGgCGCGg -3'
miRNA:   3'- -CGUGGuCGUCGG----GGCaCCGGUC-GCGC- -5'
23620 3' -63.3 NC_005261.1 + 1291 0.71 0.2749
Target:  5'- -gGCCGGCggGGCuCCCGUcGCCGGCgGCGg -3'
miRNA:   3'- cgUGGUCG--UCG-GGGCAcCGGUCG-CGC- -5'
23620 3' -63.3 NC_005261.1 + 1352 0.66 0.531555
Target:  5'- uGCACCAGCGuCuCCCGcgGGCCcuGGUccGCGu -3'
miRNA:   3'- -CGUGGUCGUcG-GGGCa-CCGG--UCG--CGC- -5'
23620 3' -63.3 NC_005261.1 + 1400 0.68 0.414386
Target:  5'- gGCGCC-GCGGCCgCGgcggcGGCgGGgGCGg -3'
miRNA:   3'- -CGUGGuCGUCGGgGCa----CCGgUCgCGC- -5'
23620 3' -63.3 NC_005261.1 + 1442 0.72 0.233883
Target:  5'- aGCACCAGCGgcggcGCCUCGgcgugcGGCuccagCAGCGCGg -3'
miRNA:   3'- -CGUGGUCGU-----CGGGGCa-----CCG-----GUCGCGC- -5'
23620 3' -63.3 NC_005261.1 + 1504 0.67 0.503269
Target:  5'- cGCgGCCGGCAGCUcgUCG-GGCgccagcucCAGCGCGc -3'
miRNA:   3'- -CG-UGGUCGUCGG--GGCaCCG--------GUCGCGC- -5'
23620 3' -63.3 NC_005261.1 + 1576 0.67 0.507004
Target:  5'- cGCGCCgagcccccagcgguuGGCGGCgCgGUGGCUGGcCGCc -3'
miRNA:   3'- -CGUGG---------------UCGUCGgGgCACCGGUC-GCGc -5'
23620 3' -63.3 NC_005261.1 + 1733 0.67 0.466621
Target:  5'- gGCACC-GCGGUgCgCG-GGCCcaGGCGCGu -3'
miRNA:   3'- -CGUGGuCGUCGgG-GCaCCGG--UCGCGC- -5'
23620 3' -63.3 NC_005261.1 + 1799 0.67 0.466621
Target:  5'- cGCAgCGGCGgcGCCCCGggguaGaGCC-GCGCGu -3'
miRNA:   3'- -CGUgGUCGU--CGGGGCa----C-CGGuCGCGC- -5'
23620 3' -63.3 NC_005261.1 + 1895 0.82 0.050558
Target:  5'- cGCGCCAGCGcGCgCCGcucaGGCCAGCGCGc -3'
miRNA:   3'- -CGUGGUCGU-CGgGGCa---CCGGUCGCGC- -5'
23620 3' -63.3 NC_005261.1 + 2110 0.73 0.217939
Target:  5'- aGCAgCAGCAcGCCCUGcGcGCCgAGCGCGc -3'
miRNA:   3'- -CGUgGUCGU-CGGGGCaC-CGG-UCGCGC- -5'
23620 3' -63.3 NC_005261.1 + 2187 0.68 0.414386
Target:  5'- gGCGCuCAGCAGCagCCGguUGcCCAGCGCc -3'
miRNA:   3'- -CGUG-GUCGUCGg-GGC--ACcGGUCGCGc -5'
23620 3' -63.3 NC_005261.1 + 2242 0.76 0.140742
Target:  5'- cGCACCGGCGGCCaCUcaGGCCgccGGCGCu -3'
miRNA:   3'- -CGUGGUCGUCGG-GGcaCCGG---UCGCGc -5'
23620 3' -63.3 NC_005261.1 + 2391 0.73 0.222622
Target:  5'- cGCGCUGGCGGCgagcgcgCCCGcgGGCCccGCGCGg -3'
miRNA:   3'- -CGUGGUCGUCG-------GGGCa-CCGGu-CGCGC- -5'
23620 3' -63.3 NC_005261.1 + 2445 0.67 0.503269
Target:  5'- -gGCCAGC-GCCUCGgggucgaaGGCgAGCGCc -3'
miRNA:   3'- cgUGGUCGuCGGGGCa-------CCGgUCGCGc -5'
23620 3' -63.3 NC_005261.1 + 2685 0.7 0.328592
Target:  5'- --cCCGGCGGCgCgCCGgcuuuUGGCCGGCGCc -3'
miRNA:   3'- cguGGUCGUCG-G-GGC-----ACCGGUCGCGc -5'
23620 3' -63.3 NC_005261.1 + 2797 0.68 0.440063
Target:  5'- cCGCCGGCGGCCgggaGgGGCCGG-GCGg -3'
miRNA:   3'- cGUGGUCGUCGGgg--CaCCGGUCgCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.