miRNA display CGI


Results 41 - 60 of 512 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23620 3' -63.3 NC_005261.1 + 11218 0.66 0.570108
Target:  5'- aCGCCGcGUGGCCCCcc-GCgGGCGCGc -3'
miRNA:   3'- cGUGGU-CGUCGGGGcacCGgUCGCGC- -5'
23620 3' -63.3 NC_005261.1 + 11901 0.71 0.300822
Target:  5'- cGCGCCcgccGCGGgCCCGgcccGGCCGGCGg- -3'
miRNA:   3'- -CGUGGu---CGUCgGGGCa---CCGGUCGCgc -5'
23620 3' -63.3 NC_005261.1 + 11931 0.7 0.321476
Target:  5'- gGCugCGGCGGCCCgCGccgcGGCggcucgccCGGCGCGc -3'
miRNA:   3'- -CGugGUCGUCGGG-GCa---CCG--------GUCGCGC- -5'
23620 3' -63.3 NC_005261.1 + 12086 0.68 0.440063
Target:  5'- cGCGCCggGGCGGCUCaaaGGCgCGGCGCc -3'
miRNA:   3'- -CGUGG--UCGUCGGGgcaCCG-GUCGCGc -5'
23620 3' -63.3 NC_005261.1 + 12154 0.75 0.147895
Target:  5'- cGCGCaGGCcccaAGCCCCGcacaGGCCAGCGCc -3'
miRNA:   3'- -CGUGgUCG----UCGGGGCa---CCGGUCGCGc -5'
23620 3' -63.3 NC_005261.1 + 12192 0.7 0.335824
Target:  5'- cCACCAuGCAGCgCCGccGCCGGUGCc -3'
miRNA:   3'- cGUGGU-CGUCGgGGCacCGGUCGCGc -5'
23620 3' -63.3 NC_005261.1 + 12321 0.75 0.163201
Target:  5'- -aGCCGGCGGgCgCGcgcuUGGCCGGCGCGg -3'
miRNA:   3'- cgUGGUCGUCgGgGC----ACCGGUCGCGC- -5'
23620 3' -63.3 NC_005261.1 + 13117 0.66 0.516392
Target:  5'- gGCGUCGGCGGCCgCGgGGCgcguguggucggugaCGGCGCGc -3'
miRNA:   3'- -CGUGGUCGUCGGgGCaCCG---------------GUCGCGC- -5'
23620 3' -63.3 NC_005261.1 + 13218 0.73 0.198134
Target:  5'- aCugCAGCacgaagacguagAGCCCCGaggccgaGGCCGGCGCGc -3'
miRNA:   3'- cGugGUCG------------UCGGGGCa------CCGGUCGCGC- -5'
23620 3' -63.3 NC_005261.1 + 14013 0.66 0.531555
Target:  5'- cCGCuCGGUgAGCUCUGcgaUGGCCAGCGgGg -3'
miRNA:   3'- cGUG-GUCG-UCGGGGC---ACCGGUCGCgC- -5'
23620 3' -63.3 NC_005261.1 + 14241 0.67 0.472033
Target:  5'- cGCGCCGGCcggggccuuuGCCCCGgugucggcuucggGGCUGGgGCu -3'
miRNA:   3'- -CGUGGUCGu---------CGGGGCa------------CCGGUCgCGc -5'
23620 3' -63.3 NC_005261.1 + 14353 0.77 0.109526
Target:  5'- aGCGgCAGCAGCCgCGgccgGGgCGGCGCGg -3'
miRNA:   3'- -CGUgGUCGUCGGgGCa---CCgGUCGCGC- -5'
23620 3' -63.3 NC_005261.1 + 15176 0.66 0.550728
Target:  5'- aGCGgCGGCGGCgCCCGcGggaaacgccGCCAucGCGCGg -3'
miRNA:   3'- -CGUgGUCGUCG-GGGCaC---------CGGU--CGCGC- -5'
23620 3' -63.3 NC_005261.1 + 15269 0.67 0.475657
Target:  5'- cGCcCCGGCGGCgCCGccgGGgC-GCGCGg -3'
miRNA:   3'- -CGuGGUCGUCGgGGCa--CCgGuCGCGC- -5'
23620 3' -63.3 NC_005261.1 + 15409 0.68 0.431402
Target:  5'- cGCGCagaaAGUagAGCCCagaGUcGGCCGGgCGCGg -3'
miRNA:   3'- -CGUGg---UCG--UCGGGg--CA-CCGGUC-GCGC- -5'
23620 3' -63.3 NC_005261.1 + 15783 0.7 0.307591
Target:  5'- cCGCUGGCGggcgccGCCCgCGcGGCCAGCGCc -3'
miRNA:   3'- cGUGGUCGU------CGGG-GCaCCGGUCGCGc -5'
23620 3' -63.3 NC_005261.1 + 15893 0.67 0.503269
Target:  5'- cGCGCgGGCGcuuuaucucccGCCCCGcgcagccggGGCCGGgGCc -3'
miRNA:   3'- -CGUGgUCGU-----------CGGGGCa--------CCGGUCgCGc -5'
23620 3' -63.3 NC_005261.1 + 16053 0.68 0.448821
Target:  5'- -gGgCAGCGGgCCCGcgccGaGCCGGCGCGu -3'
miRNA:   3'- cgUgGUCGUCgGGGCa---C-CGGUCGCGC- -5'
23620 3' -63.3 NC_005261.1 + 16254 0.68 0.406034
Target:  5'- cGCGCCGG-GGCCgCCGgGGCCGG-GCu -3'
miRNA:   3'- -CGUGGUCgUCGG-GGCaCCGGUCgCGc -5'
23620 3' -63.3 NC_005261.1 + 16648 0.72 0.228462
Target:  5'- -aACCAGCAGUCCCc-GGCUGGCaGCGa -3'
miRNA:   3'- cgUGGUCGUCGGGGcaCCGGUCG-CGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.