miRNA display CGI


Results 61 - 80 of 512 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23620 3' -63.3 NC_005261.1 + 16718 0.7 0.343172
Target:  5'- cGCGCCGGUacuGGCCCuCGgcgaGCC-GCGCGg -3'
miRNA:   3'- -CGUGGUCG---UCGGG-GCac--CGGuCGCGC- -5'
23620 3' -63.3 NC_005261.1 + 17004 0.68 0.448821
Target:  5'- aGCGCCAGCAuGUCgCaCGcGGCC-GCGCu -3'
miRNA:   3'- -CGUGGUCGU-CGG-G-GCaCCGGuCGCGc -5'
23620 3' -63.3 NC_005261.1 + 17178 0.68 0.448821
Target:  5'- gGCGugGGCAGCCCUGccgcGGCggcgagCAGCGCGc -3'
miRNA:   3'- -CGUggUCGUCGGGGCa---CCG------GUCGCGC- -5'
23620 3' -63.3 NC_005261.1 + 18740 0.77 0.11491
Target:  5'- gGCGCCccaaaacAGCGGCCCCGcagagcagGGCCAGgGCa -3'
miRNA:   3'- -CGUGG-------UCGUCGGGGCa-------CCGGUCgCGc -5'
23620 3' -63.3 NC_005261.1 + 19529 0.67 0.48478
Target:  5'- cGCAgCA-CGGCCCgCGUcaccGCCAGCGCc -3'
miRNA:   3'- -CGUgGUcGUCGGG-GCAc---CGGUCGCGc -5'
23620 3' -63.3 NC_005261.1 + 19760 0.67 0.475657
Target:  5'- cGCGCgGGCgcgGGCCCCGUcGCCucgaacaCGCGg -3'
miRNA:   3'- -CGUGgUCG---UCGGGGCAcCGGuc-----GCGC- -5'
23620 3' -63.3 NC_005261.1 + 20208 0.7 0.321476
Target:  5'- cCGCCAaaGGCCCCGcgcccgcugccUGGCCAGcCGCu -3'
miRNA:   3'- cGUGGUcgUCGGGGC-----------ACCGGUC-GCGc -5'
23620 3' -63.3 NC_005261.1 + 20578 0.71 0.2749
Target:  5'- gGCGCCGGCGGCgCgGgUGGCCuacgucgacacAGCGCc -3'
miRNA:   3'- -CGUGGUCGUCGgGgC-ACCGG-----------UCGCGc -5'
23620 3' -63.3 NC_005261.1 + 20668 0.68 0.414386
Target:  5'- gGCGgCAGCGGCagaGUGGaUCAGCGUGg -3'
miRNA:   3'- -CGUgGUCGUCGgggCACC-GGUCGCGC- -5'
23620 3' -63.3 NC_005261.1 + 21223 0.68 0.414386
Target:  5'- cGCGaCGGCGGgCCCGUcGGCUGGCGg- -3'
miRNA:   3'- -CGUgGUCGUCgGGGCA-CCGGUCGCgc -5'
23620 3' -63.3 NC_005261.1 + 21666 0.69 0.397788
Target:  5'- cCGCCGGUAcguGCUCCGgcuggGGCUcgAGCGCGu -3'
miRNA:   3'- cGUGGUCGU---CGGGGCa----CCGG--UCGCGC- -5'
23620 3' -63.3 NC_005261.1 + 21796 0.71 0.281208
Target:  5'- cCGCC-GCAGCCgCCGgccgGGCCGGgccCGCGg -3'
miRNA:   3'- cGUGGuCGUCGG-GGCa---CCGGUC---GCGC- -5'
23620 3' -63.3 NC_005261.1 + 22654 0.72 0.256654
Target:  5'- cGCGCUGGCGGCgCC-UGGgCGGCGCc -3'
miRNA:   3'- -CGUGGUCGUCGgGGcACCgGUCGCGc -5'
23620 3' -63.3 NC_005261.1 + 23212 0.68 0.431402
Target:  5'- cGCAgCGGCGGCCgCGcgcaaaaGCCGGUGCa -3'
miRNA:   3'- -CGUgGUCGUCGGgGCac-----CGGUCGCGc -5'
23620 3' -63.3 NC_005261.1 + 23464 0.66 0.531555
Target:  5'- gGCGCCA--GGCCCgCGgcGGCgAGUGCGc -3'
miRNA:   3'- -CGUGGUcgUCGGG-GCa-CCGgUCGCGC- -5'
23620 3' -63.3 NC_005261.1 + 23759 0.69 0.381623
Target:  5'- -gGCgGGCuuGCCCCGggcgGGCCGGCuaGg -3'
miRNA:   3'- cgUGgUCGu-CGGGGCa---CCGGUCGcgC- -5'
23620 3' -63.3 NC_005261.1 + 23806 0.7 0.341693
Target:  5'- -gGCCGGCuggggcgggcuuGCCCCGggcgGGCCGGCuaGg -3'
miRNA:   3'- cgUGGUCGu-----------CGGGGCa---CCGGUCGcgC- -5'
23620 3' -63.3 NC_005261.1 + 23863 0.7 0.341693
Target:  5'- -gGCCGGCuggggcgggcuuGCCCCGggcgGGCCGGCuaGg -3'
miRNA:   3'- cgUGGUCGu-----------CGGGGCa---CCGGUCGcgC- -5'
23620 3' -63.3 NC_005261.1 + 27997 0.67 0.475657
Target:  5'- cCGCCGGCcuCUCCGcgaaagggGGCCGGCGgGg -3'
miRNA:   3'- cGUGGUCGucGGGGCa-------CCGGUCGCgC- -5'
23620 3' -63.3 NC_005261.1 + 28197 0.68 0.422843
Target:  5'- -aGCCGGCGGCCUCGccGCCGcuGcCGCGg -3'
miRNA:   3'- cgUGGUCGUCGGGGCacCGGU--C-GCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.