miRNA display CGI


Results 81 - 100 of 512 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23620 3' -63.3 NC_005261.1 + 28762 0.71 0.294169
Target:  5'- cGCgGCCGGgGGCgCCUG-GGCCgcGGCGCGg -3'
miRNA:   3'- -CG-UGGUCgUCG-GGGCaCCGG--UCGCGC- -5'
23620 3' -63.3 NC_005261.1 + 28840 0.67 0.503269
Target:  5'- cGCgGCUgaGGCGGCCgUCGUGGCCGcCGCc -3'
miRNA:   3'- -CG-UGG--UCGUCGG-GGCACCGGUcGCGc -5'
23620 3' -63.3 NC_005261.1 + 29187 0.66 0.550728
Target:  5'- gGCGCCcucgccGCGGCgCCCGc-GCgGGCGCGc -3'
miRNA:   3'- -CGUGGu-----CGUCG-GGGCacCGgUCGCGC- -5'
23620 3' -63.3 NC_005261.1 + 29319 0.66 0.570108
Target:  5'- cGCGCCGccgccGCccGGCCgCGUGcGCUucggcGGCGCGg -3'
miRNA:   3'- -CGUGGU-----CG--UCGGgGCAC-CGG-----UCGCGC- -5'
23620 3' -63.3 NC_005261.1 + 29411 0.66 0.550728
Target:  5'- cGCGCUacgcGGCGGCCgCGgGGCCcGCGg- -3'
miRNA:   3'- -CGUGG----UCGUCGGgGCaCCGGuCGCgc -5'
23620 3' -63.3 NC_005261.1 + 29696 0.68 0.406034
Target:  5'- cGCACgUGGCGGCCUgCGUGGCCaugAGcCGCc -3'
miRNA:   3'- -CGUG-GUCGUCGGG-GCACCGG---UC-GCGc -5'
23620 3' -63.3 NC_005261.1 + 29781 0.68 0.414386
Target:  5'- cGCGCCcauGGCcuaCCCGgaGGCCGGCGCc -3'
miRNA:   3'- -CGUGG---UCGucgGGGCa-CCGGUCGCGc -5'
23620 3' -63.3 NC_005261.1 + 29871 0.72 0.233883
Target:  5'- gGCGCCGGC-GCCgCUGccGCCAGCGCc -3'
miRNA:   3'- -CGUGGUCGuCGG-GGCacCGGUCGCGc -5'
23620 3' -63.3 NC_005261.1 + 29963 0.7 0.314476
Target:  5'- gGCGCUagaGGCGGCgCgGUGcgccGCCGGCGCGu -3'
miRNA:   3'- -CGUGG---UCGUCGgGgCAC----CGGUCGCGC- -5'
23620 3' -63.3 NC_005261.1 + 30032 0.68 0.422843
Target:  5'- gGCugCAGCGGgCCgCGgccuGCCGGcCGCGg -3'
miRNA:   3'- -CGugGUCGUCgGG-GCac--CGGUC-GCGC- -5'
23620 3' -63.3 NC_005261.1 + 30218 0.8 0.074644
Target:  5'- cGCGCUGGCGGCgcgaaCCGUGGCCccgcuGGCGCGg -3'
miRNA:   3'- -CGUGGUCGUCGg----GGCACCGG-----UCGCGC- -5'
23620 3' -63.3 NC_005261.1 + 30262 0.7 0.331471
Target:  5'- cGCGCggcgCGGCGGCCCgCGcgcccgccuggacgcUGGCCcGCGCGc -3'
miRNA:   3'- -CGUG----GUCGUCGGG-GC---------------ACCGGuCGCGC- -5'
23620 3' -63.3 NC_005261.1 + 30350 0.82 0.051896
Target:  5'- cGCGCUcGCGGCCCUGaaGGCCGGCGCGc -3'
miRNA:   3'- -CGUGGuCGUCGGGGCa-CCGGUCGCGC- -5'
23620 3' -63.3 NC_005261.1 + 31034 0.71 0.281208
Target:  5'- -aGCCGGCGcGCCgCCG-GGuccCCAGCGCGg -3'
miRNA:   3'- cgUGGUCGU-CGG-GGCaCC---GGUCGCGC- -5'
23620 3' -63.3 NC_005261.1 + 31104 0.7 0.328592
Target:  5'- cGC-CCGGCGGCCCCGccGCCgacGGCGg- -3'
miRNA:   3'- -CGuGGUCGUCGGGGCacCGG---UCGCgc -5'
23620 3' -63.3 NC_005261.1 + 31183 0.71 0.268705
Target:  5'- gGCGCUGGCGgccuacugccGCCCCGaGGUCgcGGCGCGg -3'
miRNA:   3'- -CGUGGUCGU----------CGGGGCaCCGG--UCGCGC- -5'
23620 3' -63.3 NC_005261.1 + 31335 0.68 0.448821
Target:  5'- cCGCCAGCGcGCCgCUGcGGC-GGCGCGu -3'
miRNA:   3'- cGUGGUCGU-CGG-GGCaCCGgUCGCGC- -5'
23620 3' -63.3 NC_005261.1 + 31464 0.83 0.040997
Target:  5'- aGCGCCGGCGGCCUgaGUGGCCGccgguGCGCGg -3'
miRNA:   3'- -CGUGGUCGUCGGGg-CACCGGU-----CGCGC- -5'
23620 3' -63.3 NC_005261.1 + 31713 0.66 0.522058
Target:  5'- aCGCC-GUGGaCCCCGcgaacUGGCC-GCGCGa -3'
miRNA:   3'- cGUGGuCGUC-GGGGC-----ACCGGuCGCGC- -5'
23620 3' -63.3 NC_005261.1 + 31778 0.7 0.343172
Target:  5'- cGCGCC-GCGGUgcugCCCGcGGCgCAGUGCGc -3'
miRNA:   3'- -CGUGGuCGUCG----GGGCaCCG-GUCGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.