miRNA display CGI


Results 101 - 120 of 512 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23620 3' -63.3 NC_005261.1 + 31831 0.7 0.314476
Target:  5'- cGCGCUGGCGcGCgCCGUgcuGGCCucgcGGCGCGu -3'
miRNA:   3'- -CGUGGUCGU-CGgGGCA---CCGG----UCGCGC- -5'
23620 3' -63.3 NC_005261.1 + 31877 0.66 0.541113
Target:  5'- gGCGCCuucGCGcGCgCCGaGGCCGcuuacGCGCGg -3'
miRNA:   3'- -CGUGGu--CGU-CGgGGCaCCGGU-----CGCGC- -5'
23620 3' -63.3 NC_005261.1 + 31990 0.71 0.268705
Target:  5'- cGCACC-GCGGUgCCCGUGccGCC-GCGCGa -3'
miRNA:   3'- -CGUGGuCGUCG-GGGCAC--CGGuCGCGC- -5'
23620 3' -63.3 NC_005261.1 + 32018 0.67 0.493985
Target:  5'- aGUACCGGCAGCgcgugcugCCGcGGCUcgacgGGCGCa -3'
miRNA:   3'- -CGUGGUCGUCGg-------GGCaCCGG-----UCGCGc -5'
23620 3' -63.3 NC_005261.1 + 32157 0.66 0.559426
Target:  5'- cGCGCCGcuGCGGCCgguguaCC-UGGCCugcgggcGGCGCGc -3'
miRNA:   3'- -CGUGGU--CGUCGG------GGcACCGG-------UCGCGC- -5'
23620 3' -63.3 NC_005261.1 + 32219 0.66 0.531555
Target:  5'- aGCuGCCGGCcGCggCgGUGGCCuucuGCGCGg -3'
miRNA:   3'- -CG-UGGUCGuCGg-GgCACCGGu---CGCGC- -5'
23620 3' -63.3 NC_005261.1 + 32302 0.66 0.550728
Target:  5'- gGCGCCGcccccGCcGCCgCCGcGGCCgcGGCGCc -3'
miRNA:   3'- -CGUGGU-----CGuCGG-GGCaCCGG--UCGCGc -5'
23620 3' -63.3 NC_005261.1 + 32419 0.72 0.233883
Target:  5'- cCGCCGGCgacgggAGCCCCGccGGCCugGGCGCc -3'
miRNA:   3'- cGUGGUCG------UCGGGGCa-CCGG--UCGCGc -5'
23620 3' -63.3 NC_005261.1 + 32527 0.79 0.076594
Target:  5'- cGCGcCCGGCcccGGCCCCGgccgcggcgcgGGCCGGCGCGc -3'
miRNA:   3'- -CGU-GGUCG---UCGGGGCa----------CCGGUCGCGC- -5'
23620 3' -63.3 NC_005261.1 + 33515 0.67 0.500476
Target:  5'- gGCGgCGGCGGCaCCGcUGGCCccgggagcaccaggGGCGCc -3'
miRNA:   3'- -CGUgGUCGUCGgGGC-ACCGG--------------UCGCGc -5'
23620 3' -63.3 NC_005261.1 + 33570 0.73 0.208328
Target:  5'- cCGCCAGCccugccAGCCCCGcgagcaccaggggcgGcGCCGGCGCGg -3'
miRNA:   3'- cGUGGUCG------UCGGGGCa--------------C-CGGUCGCGC- -5'
23620 3' -63.3 NC_005261.1 + 34326 0.7 0.307591
Target:  5'- -gGCCgAGgGGCCCCaaggGGCCGGgGCGg -3'
miRNA:   3'- cgUGG-UCgUCGGGGca--CCGGUCgCGC- -5'
23620 3' -63.3 NC_005261.1 + 34464 0.72 0.250796
Target:  5'- cGgGCCGGgGGCCCCGUaccugcGGCgGGUGCu -3'
miRNA:   3'- -CgUGGUCgUCGGGGCA------CCGgUCGCGc -5'
23620 3' -63.3 NC_005261.1 + 35438 0.72 0.233883
Target:  5'- aGCGCCcGCccGCCCCGcgGGUCuaGGCGCGg -3'
miRNA:   3'- -CGUGGuCGu-CGGGGCa-CCGG--UCGCGC- -5'
23620 3' -63.3 NC_005261.1 + 35498 0.67 0.493985
Target:  5'- gGCACCcGCccuuGCCCCGcUGG-CAGCgGCa -3'
miRNA:   3'- -CGUGGuCGu---CGGGGC-ACCgGUCG-CGc -5'
23620 3' -63.3 NC_005261.1 + 35689 0.75 0.151594
Target:  5'- cCGCCGGCgAGCCCCGgugGGCCGGgGg- -3'
miRNA:   3'- cGUGGUCG-UCGGGGCa--CCGGUCgCgc -5'
23620 3' -63.3 NC_005261.1 + 35928 0.66 0.522058
Target:  5'- cGCGCC-GCAGCCCa---GCgGGCGCc -3'
miRNA:   3'- -CGUGGuCGUCGGGgcacCGgUCGCGc -5'
23620 3' -63.3 NC_005261.1 + 36587 0.69 0.358212
Target:  5'- cCGCC-GCGGCCaCCGgggggGGgCAGCGCu -3'
miRNA:   3'- cGUGGuCGUCGG-GGCa----CCgGUCGCGc -5'
23620 3' -63.3 NC_005261.1 + 36804 0.73 0.223148
Target:  5'- uGCGCCGGCcggcgcuacguGCCCCGguaugcgGuGCCGGCGCc -3'
miRNA:   3'- -CGUGGUCGu----------CGGGGCa------C-CGGUCGCGc -5'
23620 3' -63.3 NC_005261.1 + 36989 0.68 0.414386
Target:  5'- gGCuCCAGCcggAGCCCgCG-GGCU-GCGCGg -3'
miRNA:   3'- -CGuGGUCG---UCGGG-GCaCCGGuCGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.