miRNA display CGI


Results 21 - 40 of 512 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23620 3' -63.3 NC_005261.1 + 130774 0.67 0.503269
Target:  5'- aGCAgCUGGC-GCCCCGcgcUGGCCGcacCGCGg -3'
miRNA:   3'- -CGU-GGUCGuCGGGGC---ACCGGUc--GCGC- -5'
23620 3' -63.3 NC_005261.1 + 130582 0.71 0.300822
Target:  5'- aGCGCCGccgcGCGGCCCCGcgccUGGCCcgucuuugccuGCGCc -3'
miRNA:   3'- -CGUGGU----CGUCGGGGC----ACCGGu----------CGCGc -5'
23620 3' -63.3 NC_005261.1 + 130249 0.66 0.531555
Target:  5'- cGCGCCAGCGGCUCguacugCGgGGCgucccGCGCGc -3'
miRNA:   3'- -CGUGGUCGUCGGG------GCaCCGgu---CGCGC- -5'
23620 3' -63.3 NC_005261.1 + 130105 0.67 0.503269
Target:  5'- cGCGCCAGCGacugcGCCuuGgcgaGCCGccGCGCGc -3'
miRNA:   3'- -CGUGGUCGU-----CGGggCac--CGGU--CGCGC- -5'
23620 3' -63.3 NC_005261.1 + 129819 0.66 0.512628
Target:  5'- cGCGCCcuGC-GCCCgGaUGcCCAGCGCGc -3'
miRNA:   3'- -CGUGGu-CGuCGGGgC-ACcGGUCGCGC- -5'
23620 3' -63.3 NC_005261.1 + 129762 0.67 0.475657
Target:  5'- aGCACCGGCGaCCgCCG-GGCuCGGCcCGg -3'
miRNA:   3'- -CGUGGUCGUcGG-GGCaCCG-GUCGcGC- -5'
23620 3' -63.3 NC_005261.1 + 127887 0.67 0.47475
Target:  5'- cGCGCCGGCgcccgucGGgCCCG-GGCCuGgGCu -3'
miRNA:   3'- -CGUGGUCG-------UCgGGGCaCCGGuCgCGc -5'
23620 3' -63.3 NC_005261.1 + 127780 0.68 0.406034
Target:  5'- cGC-CCGGCuGCUCgagCGgcgGGCCGGCGCc -3'
miRNA:   3'- -CGuGGUCGuCGGG---GCa--CCGGUCGCGc -5'
23620 3' -63.3 NC_005261.1 + 127694 0.66 0.560395
Target:  5'- uGCcCCGGCGGCgCCGgagGaGCU-GCGCGu -3'
miRNA:   3'- -CGuGGUCGUCGgGGCa--C-CGGuCGCGC- -5'
23620 3' -63.3 NC_005261.1 + 127618 0.66 0.512628
Target:  5'- aCGCUAGCGGCC----GGCCGGaCGCGa -3'
miRNA:   3'- cGUGGUCGUCGGggcaCCGGUC-GCGC- -5'
23620 3' -63.3 NC_005261.1 + 127579 0.69 0.365903
Target:  5'- cGCACCAGgGcGCCCUGggcgucuucggGGCC-GCGCu -3'
miRNA:   3'- -CGUGGUCgU-CGGGGCa----------CCGGuCGCGc -5'
23620 3' -63.3 NC_005261.1 + 126941 0.68 0.422843
Target:  5'- cGCgGCCAGgGGCgCCGggcgcgggGGCggCAGCGCGa -3'
miRNA:   3'- -CG-UGGUCgUCGgGGCa-------CCG--GUCGCGC- -5'
23620 3' -63.3 NC_005261.1 + 126587 0.66 0.541113
Target:  5'- cGCGgCAGUAGCCCaaaaacaGGCCcGCGUa -3'
miRNA:   3'- -CGUgGUCGUCGGGgca----CCGGuCGCGc -5'
23620 3' -63.3 NC_005261.1 + 126064 0.74 0.188833
Target:  5'- gGCGCCAGCcGCCcgCCGgccucGGCgGGCGCGc -3'
miRNA:   3'- -CGUGGUCGuCGG--GGCa----CCGgUCGCGC- -5'
23620 3' -63.3 NC_005261.1 + 125351 0.67 0.457675
Target:  5'- gGCGuCCAGCAgGCUCCGccgGGCagaggGGCGCu -3'
miRNA:   3'- -CGU-GGUCGU-CGGGGCa--CCGg----UCGCGc -5'
23620 3' -63.3 NC_005261.1 + 124224 0.69 0.381623
Target:  5'- gGCuGCCAGCAGCCCaaccGCCGcCGCGg -3'
miRNA:   3'- -CG-UGGUCGUCGGGgcacCGGUcGCGC- -5'
23620 3' -63.3 NC_005261.1 + 123747 0.73 0.207833
Target:  5'- cCGCCAGUAGgccuCCCCGUaaacauGuGCCAGCGCGc -3'
miRNA:   3'- cGUGGUCGUC----GGGGCA------C-CGGUCGCGC- -5'
23620 3' -63.3 NC_005261.1 + 122448 0.71 0.268705
Target:  5'- aGCAgCCAGCGGUaggCCGUGGC-AGCGUa -3'
miRNA:   3'- -CGU-GGUCGUCGg--GGCACCGgUCGCGc -5'
23620 3' -63.3 NC_005261.1 + 122286 0.67 0.457675
Target:  5'- aGCAUCAGCgcGGCCCCGcuGCCgcaGGCGaCGc -3'
miRNA:   3'- -CGUGGUCG--UCGGGGCacCGG---UCGC-GC- -5'
23620 3' -63.3 NC_005261.1 + 122230 0.73 0.204881
Target:  5'- --uCCAgGCGGCCCCGacgcgcaucagcagGGCCAGCGCc -3'
miRNA:   3'- cguGGU-CGUCGGGGCa-------------CCGGUCGCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.