miRNA display CGI


Results 41 - 60 of 512 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23620 3' -63.3 NC_005261.1 + 122013 0.72 0.260821
Target:  5'- gGCAUCAGCGGCCCCauaaagugcgcgaaGcGGCaCuGCGCGc -3'
miRNA:   3'- -CGUGGUCGUCGGGG--------------CaCCG-GuCGCGC- -5'
23620 3' -63.3 NC_005261.1 + 121947 0.66 0.521112
Target:  5'- aGCGCCAGCuugaaccAGCUcgCCGUGccgcgcuCCAGCGCc -3'
miRNA:   3'- -CGUGGUCG-------UCGG--GGCACc------GGUCGCGc -5'
23620 3' -63.3 NC_005261.1 + 121851 0.73 0.217939
Target:  5'- gGCGCCAGCAGCCCgCGgcucccGCCgAGcCGCa -3'
miRNA:   3'- -CGUGGUCGUCGGG-GCac----CGG-UC-GCGc -5'
23620 3' -63.3 NC_005261.1 + 121632 0.74 0.171377
Target:  5'- cCGCuCGGCGGCCgCCGccGGCgAGCGCGg -3'
miRNA:   3'- cGUG-GUCGUCGG-GGCa-CCGgUCGCGC- -5'
23620 3' -63.3 NC_005261.1 + 121481 0.67 0.48478
Target:  5'- cGUACCGGCuGCCgCCacgGGgCGGCGgGg -3'
miRNA:   3'- -CGUGGUCGuCGG-GGca-CCgGUCGCgC- -5'
23620 3' -63.3 NC_005261.1 + 121373 0.66 0.550728
Target:  5'- cGUACUgcaGGC-GCCCCGcGGCggCGGCGCc -3'
miRNA:   3'- -CGUGG---UCGuCGGGGCaCCG--GUCGCGc -5'
23620 3' -63.3 NC_005261.1 + 121239 0.66 0.522058
Target:  5'- gGCGCCGGcCAGCUCCGacucggGGuCCGcCGCa -3'
miRNA:   3'- -CGUGGUC-GUCGGGGCa-----CC-GGUcGCGc -5'
23620 3' -63.3 NC_005261.1 + 121080 0.71 0.296817
Target:  5'- gGCGCCGGCGGCCgCCagcgccuccaGGCCgugcggguccucuagGGCGCGg -3'
miRNA:   3'- -CGUGGUCGUCGG-GGca--------CCGG---------------UCGCGC- -5'
23620 3' -63.3 NC_005261.1 + 120631 0.66 0.525849
Target:  5'- -uGCUgguGGCGGCCCUGUGccugcggcgcaaggcGCgGGCGCGc -3'
miRNA:   3'- cgUGG---UCGUCGGGGCAC---------------CGgUCGCGC- -5'
23620 3' -63.3 NC_005261.1 + 120556 0.67 0.475657
Target:  5'- cGC-CCAGCcugaucggaAGCCCCGUcaucGUCAGCGUc -3'
miRNA:   3'- -CGuGGUCG---------UCGGGGCAc---CGGUCGCGc -5'
23620 3' -63.3 NC_005261.1 + 120003 0.66 0.531555
Target:  5'- gGCGCCGGCuacGCggCCGUGuGCC-GCGCc -3'
miRNA:   3'- -CGUGGUCGu--CGg-GGCAC-CGGuCGCGc -5'
23620 3' -63.3 NC_005261.1 + 119663 0.68 0.406034
Target:  5'- cGCGCCuGgAGCUCUGguuCCAGCGCGu -3'
miRNA:   3'- -CGUGGuCgUCGGGGCaccGGUCGCGC- -5'
23620 3' -63.3 NC_005261.1 + 119211 0.71 0.2749
Target:  5'- cGCGCCcGCcauGGCCCUGccggGGCgAGCGUGg -3'
miRNA:   3'- -CGUGGuCG---UCGGGGCa---CCGgUCGCGC- -5'
23620 3' -63.3 NC_005261.1 + 119053 0.68 0.440063
Target:  5'- cGCGCCcGCGGCCgcgcgugugcuuUCGUGGCCcGgGCc -3'
miRNA:   3'- -CGUGGuCGUCGG------------GGCACCGGuCgCGc -5'
23620 3' -63.3 NC_005261.1 + 118937 0.66 0.509813
Target:  5'- gGCGCCGcgcggcuggccGCGGCgCaCGUGGCCAagguccugcacgccGCGCu -3'
miRNA:   3'- -CGUGGU-----------CGUCGgG-GCACCGGU--------------CGCGc -5'
23620 3' -63.3 NC_005261.1 + 118897 0.69 0.397788
Target:  5'- cGCGCUGGUGGCCUgCGUcugGGuCCGGCGCc -3'
miRNA:   3'- -CGUGGUCGUCGGG-GCA---CC-GGUCGCGc -5'
23620 3' -63.3 NC_005261.1 + 118864 0.77 0.109526
Target:  5'- cGCGCCcGCGGCCCUGgccucGGCCAcCGCGg -3'
miRNA:   3'- -CGUGGuCGUCGGGGCa----CCGGUcGCGC- -5'
23620 3' -63.3 NC_005261.1 + 118637 0.73 0.212834
Target:  5'- cGCGgCGGCgcucugGGCCCCG-GGCC-GCGCGc -3'
miRNA:   3'- -CGUgGUCG------UCGGGGCaCCGGuCGCGC- -5'
23620 3' -63.3 NC_005261.1 + 118394 0.68 0.406034
Target:  5'- gGCGCUGGCGGCCgCG-GGCgccgCAGcCGCGc -3'
miRNA:   3'- -CGUGGUCGUCGGgGCaCCG----GUC-GCGC- -5'
23620 3' -63.3 NC_005261.1 + 118124 0.66 0.570108
Target:  5'- cCGCCGGCucGCgCCGcucGGCCGGCucGCGc -3'
miRNA:   3'- cGUGGUCGu-CGgGGCa--CCGGUCG--CGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.