miRNA display CGI


Results 61 - 80 of 512 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23620 3' -63.3 NC_005261.1 + 118055 0.7 0.307591
Target:  5'- cGCGCUGGCGGCCgCGgcagcGGCCGcagccGCGCu -3'
miRNA:   3'- -CGUGGUCGUCGGgGCa----CCGGU-----CGCGc -5'
23620 3' -63.3 NC_005261.1 + 117676 0.74 0.183882
Target:  5'- cGCGCCcggccgGGCccgcggcgaggccGGCCCUGaGGCCGGCGCGc -3'
miRNA:   3'- -CGUGG------UCG-------------UCGGGGCaCCGGUCGCGC- -5'
23620 3' -63.3 NC_005261.1 + 117290 0.7 0.319364
Target:  5'- gGCGCCgAGCccgcccucgagcccAGCCCCGgcgcgGGCagcaAGCGCa -3'
miRNA:   3'- -CGUGG-UCG--------------UCGGGGCa----CCGg---UCGCGc -5'
23620 3' -63.3 NC_005261.1 + 116075 0.67 0.475657
Target:  5'- cGCGCCGGU--CCCCGUGGau-GcCGCGg -3'
miRNA:   3'- -CGUGGUCGucGGGGCACCgguC-GCGC- -5'
23620 3' -63.3 NC_005261.1 + 115917 0.67 0.457675
Target:  5'- aGCGCCGGCcGCCgCGU--CCGcGCGCGg -3'
miRNA:   3'- -CGUGGUCGuCGGgGCAccGGU-CGCGC- -5'
23620 3' -63.3 NC_005261.1 + 115831 0.72 0.228462
Target:  5'- uGCGCCAGCuugggcgcguuGGCCCgCGcGGCCcccgccgaGGCGCGc -3'
miRNA:   3'- -CGUGGUCG-----------UCGGG-GCaCCGG--------UCGCGC- -5'
23620 3' -63.3 NC_005261.1 + 113888 0.66 0.541113
Target:  5'- cCugUAGCGGCgaCGcGGCgGGCGCGa -3'
miRNA:   3'- cGugGUCGUCGggGCaCCGgUCGCGC- -5'
23620 3' -63.3 NC_005261.1 + 113565 0.66 0.570108
Target:  5'- cCGCgAGCAGUggUCgGUGGCCGccGCGCu -3'
miRNA:   3'- cGUGgUCGUCG--GGgCACCGGU--CGCGc -5'
23620 3' -63.3 NC_005261.1 + 113532 0.69 0.365903
Target:  5'- -gGCCAGcCGGCUCgG-GGCCGuGCGCGc -3'
miRNA:   3'- cgUGGUC-GUCGGGgCaCCGGU-CGCGC- -5'
23620 3' -63.3 NC_005261.1 + 113303 0.67 0.503269
Target:  5'- cGCugCcGCGGgCCUG-GGCCcggcuGCGCGa -3'
miRNA:   3'- -CGugGuCGUCgGGGCaCCGGu----CGCGC- -5'
23620 3' -63.3 NC_005261.1 + 112228 0.68 0.437454
Target:  5'- -gACCAGCAGCacggaggCCGUggaGGCCAucaccacggaggucGCGCGg -3'
miRNA:   3'- cgUGGUCGUCGg------GGCA---CCGGU--------------CGCGC- -5'
23620 3' -63.3 NC_005261.1 + 110574 0.69 0.373707
Target:  5'- cGCuCCA-CGGCCCaCGUgccGGCCuGCGCGu -3'
miRNA:   3'- -CGuGGUcGUCGGG-GCA---CCGGuCGCGC- -5'
23620 3' -63.3 NC_005261.1 + 110217 0.67 0.466621
Target:  5'- cGCAaccUCGGCGacGCCUccagCGUGGgCGGCGCGg -3'
miRNA:   3'- -CGU---GGUCGU--CGGG----GCACCgGUCGCGC- -5'
23620 3' -63.3 NC_005261.1 + 109339 0.66 0.559426
Target:  5'- cGCGgggUCGGCGGCCgCGUcGCCguccagccgcucgAGCGCGg -3'
miRNA:   3'- -CGU---GGUCGUCGGgGCAcCGG-------------UCGCGC- -5'
23620 3' -63.3 NC_005261.1 + 109182 0.72 0.233883
Target:  5'- cCGCUAGCAGCgCCGcgucgGGCguGCGCa -3'
miRNA:   3'- cGUGGUCGUCGgGGCa----CCGguCGCGc -5'
23620 3' -63.3 NC_005261.1 + 108739 0.67 0.503269
Target:  5'- cCAgCGGCGGCgCCGcGGCguccgCGGCGCGc -3'
miRNA:   3'- cGUgGUCGUCGgGGCaCCG-----GUCGCGC- -5'
23620 3' -63.3 NC_005261.1 + 108525 0.7 0.307591
Target:  5'- cGCACgaAGgGGUCUCGguaGGCCAGCGCc -3'
miRNA:   3'- -CGUGg-UCgUCGGGGCa--CCGGUCGCGc -5'
23620 3' -63.3 NC_005261.1 + 108399 0.66 0.522058
Target:  5'- cGCuCCAGCAGCCgCGccaccGcGCCuGCGUGc -3'
miRNA:   3'- -CGuGGUCGUCGGgGCa----C-CGGuCGCGC- -5'
23620 3' -63.3 NC_005261.1 + 108345 0.66 0.560395
Target:  5'- cGCGCCAGgGccGCCgCCGUcGCaGGCGCa -3'
miRNA:   3'- -CGUGGUCgU--CGG-GGCAcCGgUCGCGc -5'
23620 3' -63.3 NC_005261.1 + 108244 0.68 0.406034
Target:  5'- uGC-CCGGCGugaaCCCCGccgcGGCCAGCGUc -3'
miRNA:   3'- -CGuGGUCGUc---GGGGCa---CCGGUCGCGc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.