miRNA display CGI


Results 81 - 100 of 512 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23620 3' -63.3 NC_005261.1 + 108142 0.66 0.522058
Target:  5'- cCGCCAcGCAGCCCacc-GCCugcAGCGCGu -3'
miRNA:   3'- cGUGGU-CGUCGGGgcacCGG---UCGCGC- -5'
23620 3' -63.3 NC_005261.1 + 107885 0.67 0.497689
Target:  5'- cGCGCCcGCGGCCCgcuuguccgcggccgCGgccucGGCCAcgagugccGCGCGg -3'
miRNA:   3'- -CGUGGuCGUCGGG---------------GCa----CCGGU--------CGCGC- -5'
23620 3' -63.3 NC_005261.1 + 107809 0.69 0.373707
Target:  5'- cGCGCgCGGCGGCCCUagcGGCCGcCGCc -3'
miRNA:   3'- -CGUG-GUCGUCGGGGca-CCGGUcGCGc -5'
23620 3' -63.3 NC_005261.1 + 107506 0.69 0.397788
Target:  5'- uGCGCCAcGCAGgCCgCGccgaaGGgCAGCGCGu -3'
miRNA:   3'- -CGUGGU-CGUCgGG-GCa----CCgGUCGCGC- -5'
23620 3' -63.3 NC_005261.1 + 107466 0.66 0.512628
Target:  5'- gGCACC-GCAGUCCCGcGcCCA-CGCGa -3'
miRNA:   3'- -CGUGGuCGUCGGGGCaCcGGUcGCGC- -5'
23620 3' -63.3 NC_005261.1 + 107127 0.71 0.287631
Target:  5'- cGCGCCGGCgacggcgcccacGGCCgCGgccauggaggcGGCCAGCGCc -3'
miRNA:   3'- -CGUGGUCG------------UCGGgGCa----------CCGGUCGCGc -5'
23620 3' -63.3 NC_005261.1 + 107060 0.68 0.406034
Target:  5'- cCGCCAGCAucuGCugCCCG-GGCacCGGCGCGa -3'
miRNA:   3'- cGUGGUCGU---CG--GGGCaCCG--GUCGCGC- -5'
23620 3' -63.3 NC_005261.1 + 106804 0.77 0.112046
Target:  5'- cGCACCAGC-GCCgaGUGGCCcgccagcAGCGCGu -3'
miRNA:   3'- -CGUGGUCGuCGGggCACCGG-------UCGCGC- -5'
23620 3' -63.3 NC_005261.1 + 106731 0.7 0.321476
Target:  5'- cCACCucguGCAGCCCCG-GcGCCuccGCGCc -3'
miRNA:   3'- cGUGGu---CGUCGGGGCaC-CGGu--CGCGc -5'
23620 3' -63.3 NC_005261.1 + 106571 0.73 0.223148
Target:  5'- nGCGCC---GGCCCCGgGGCCGccGCGCGg -3'
miRNA:   3'- -CGUGGucgUCGGGGCaCCGGU--CGCGC- -5'
23620 3' -63.3 NC_005261.1 + 106532 0.79 0.08489
Target:  5'- aGCACCgccuccucggcGGCGGCCgCGUccgGGCCGGCGCGc -3'
miRNA:   3'- -CGUGG-----------UCGUCGGgGCA---CCGGUCGCGC- -5'
23620 3' -63.3 NC_005261.1 + 106218 0.68 0.431402
Target:  5'- aGCGCCcGCGGCCgCC-UGGCgCGGcCGCc -3'
miRNA:   3'- -CGUGGuCGUCGG-GGcACCG-GUC-GCGc -5'
23620 3' -63.3 NC_005261.1 + 105952 0.66 0.531555
Target:  5'- cGCGCC-GUcgauGGCCUCGgcgcCCAGCGCGg -3'
miRNA:   3'- -CGUGGuCG----UCGGGGCacc-GGUCGCGC- -5'
23620 3' -63.3 NC_005261.1 + 105519 0.7 0.327875
Target:  5'- uGCACCAGCGcGCCCgcccaccgggacuCGggcUGGCCGcacGCGCGc -3'
miRNA:   3'- -CGUGGUCGU-CGGG-------------GC---ACCGGU---CGCGC- -5'
23620 3' -63.3 NC_005261.1 + 105285 0.75 0.159246
Target:  5'- aGCGCCGGCgAGCCCgGgcgcGCgAGCGCGg -3'
miRNA:   3'- -CGUGGUCG-UCGGGgCac--CGgUCGCGC- -5'
23620 3' -63.3 NC_005261.1 + 104969 0.68 0.406034
Target:  5'- cGCAaCAGCGuccucccccGCCCCGgcgcCCAGCGCGg -3'
miRNA:   3'- -CGUgGUCGU---------CGGGGCacc-GGUCGCGC- -5'
23620 3' -63.3 NC_005261.1 + 104677 0.72 0.250796
Target:  5'- uGCugCGGCAGCgCCUG-GGCCAcCGCc -3'
miRNA:   3'- -CGugGUCGUCG-GGGCaCCGGUcGCGc -5'
23620 3' -63.3 NC_005261.1 + 104499 0.67 0.466621
Target:  5'- gGCGuCguGCAGCCgcuCCGUGGCgGcCGCGa -3'
miRNA:   3'- -CGU-GguCGUCGG---GGCACCGgUcGCGC- -5'
23620 3' -63.3 NC_005261.1 + 104334 0.73 0.223148
Target:  5'- cGCGuCCAGCGGCCggCCGUcGCgCAGCGCc -3'
miRNA:   3'- -CGU-GGUCGUCGG--GGCAcCG-GUCGCGc -5'
23620 3' -63.3 NC_005261.1 + 104266 0.69 0.373707
Target:  5'- aGCGCC-GCGGUCUCGgcGGCU-GCGCGg -3'
miRNA:   3'- -CGUGGuCGUCGGGGCa-CCGGuCGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.