Results 61 - 80 of 512 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23620 | 3' | -63.3 | NC_005261.1 | + | 62996 | 0.66 | 0.560395 |
Target: 5'- --uCCAGcCGGCCCuCGgcGGCCGcgcccGCGCGg -3' miRNA: 3'- cguGGUC-GUCGGG-GCa-CCGGU-----CGCGC- -5' |
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23620 | 3' | -63.3 | NC_005261.1 | + | 45415 | 0.66 | 0.560395 |
Target: 5'- uGCugCGGCGccuGCgCCCGccGCCcGCGCGc -3' miRNA: 3'- -CGugGUCGU---CG-GGGCacCGGuCGCGC- -5' |
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23620 | 3' | -63.3 | NC_005261.1 | + | 101665 | 0.66 | 0.550728 |
Target: 5'- aGCAUCuGC-GCCUCGUaGGCCgAGCcgGCGa -3' miRNA: 3'- -CGUGGuCGuCGGGGCA-CCGG-UCG--CGC- -5' |
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23620 | 3' | -63.3 | NC_005261.1 | + | 101071 | 0.66 | 0.550728 |
Target: 5'- aGCcCCAGCAccacGCCCgCGgccGCCugcAGCGCGg -3' miRNA: 3'- -CGuGGUCGU----CGGG-GCac-CGG---UCGCGC- -5' |
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23620 | 3' | -63.3 | NC_005261.1 | + | 93751 | 0.66 | 0.550728 |
Target: 5'- cGUACuCGGCGGCCCgCGcGcGCgCGGCGUc -3' miRNA: 3'- -CGUG-GUCGUCGGG-GCaC-CG-GUCGCGc -5' |
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23620 | 3' | -63.3 | NC_005261.1 | + | 81259 | 0.66 | 0.550728 |
Target: 5'- aGCGCgAGUucuCCCCGgccGCCuGCGCGa -3' miRNA: 3'- -CGUGgUCGuc-GGGGCac-CGGuCGCGC- -5' |
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23620 | 3' | -63.3 | NC_005261.1 | + | 52671 | 0.66 | 0.550728 |
Target: 5'- cGCACUucgAGCgGGCCCUGcucGCgGGCGCGc -3' miRNA: 3'- -CGUGG---UCG-UCGGGGCac-CGgUCGCGC- -5' |
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23620 | 3' | -63.3 | NC_005261.1 | + | 46542 | 0.66 | 0.550728 |
Target: 5'- cGCGCUGGCAGUcguCCCGcagcGCgAGCGCu -3' miRNA: 3'- -CGUGGUCGUCG---GGGCac--CGgUCGCGc -5' |
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23620 | 3' | -63.3 | NC_005261.1 | + | 38692 | 0.66 | 0.550728 |
Target: 5'- cGCGCUGGCcgGGCCCaagccGGCCAGgccCGCGc -3' miRNA: 3'- -CGUGGUCG--UCGGGgca--CCGGUC---GCGC- -5' |
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23620 | 3' | -63.3 | NC_005261.1 | + | 29187 | 0.66 | 0.550728 |
Target: 5'- gGCGCCcucgccGCGGCgCCCGc-GCgGGCGCGc -3' miRNA: 3'- -CGUGGu-----CGUCG-GGGCacCGgUCGCGC- -5' |
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23620 | 3' | -63.3 | NC_005261.1 | + | 121373 | 0.66 | 0.550728 |
Target: 5'- cGUACUgcaGGC-GCCCCGcGGCggCGGCGCc -3' miRNA: 3'- -CGUGG---UCGuCGGGGCaCCG--GUCGCGc -5' |
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23620 | 3' | -63.3 | NC_005261.1 | + | 29411 | 0.66 | 0.550728 |
Target: 5'- cGCGCUacgcGGCGGCCgCGgGGCCcGCGg- -3' miRNA: 3'- -CGUGG----UCGUCGGgGCaCCGGuCGCgc -5' |
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23620 | 3' | -63.3 | NC_005261.1 | + | 10246 | 0.66 | 0.560395 |
Target: 5'- cGCACUcGCcGCCgCG-GGCCuGGCGCc -3' miRNA: 3'- -CGUGGuCGuCGGgGCaCCGG-UCGCGc -5' |
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23620 | 3' | -63.3 | NC_005261.1 | + | 109339 | 0.66 | 0.559426 |
Target: 5'- cGCGgggUCGGCGGCCgCGUcGCCguccagccgcucgAGCGCGg -3' miRNA: 3'- -CGU---GGUCGUCGGgGCAcCGG-------------UCGCGC- -5' |
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23620 | 3' | -63.3 | NC_005261.1 | + | 32157 | 0.66 | 0.559426 |
Target: 5'- cGCGCCGcuGCGGCCgguguaCC-UGGCCugcgggcGGCGCGc -3' miRNA: 3'- -CGUGGU--CGUCGG------GGcACCGG-------UCGCGC- -5' |
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23620 | 3' | -63.3 | NC_005261.1 | + | 49984 | 0.66 | 0.55749 |
Target: 5'- gGCGCC-GCcgucgucccccccgAGCCgCGccGCCAGCGCGc -3' miRNA: 3'- -CGUGGuCG--------------UCGGgGCacCGGUCGCGC- -5' |
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23620 | 3' | -63.3 | NC_005261.1 | + | 37592 | 0.66 | 0.55749 |
Target: 5'- gGUACCAcacggccggucccuGCAGCUCCGgugaUGGCCucuacgccuagcGGCGCc -3' miRNA: 3'- -CGUGGU--------------CGUCGGGGC----ACCGG------------UCGCGc -5' |
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23620 | 3' | -63.3 | NC_005261.1 | + | 67494 | 0.66 | 0.550728 |
Target: 5'- cCGCCGcCAGCCgCgCGUaguaGGCCAGCGUc -3' miRNA: 3'- cGUGGUcGUCGG-G-GCA----CCGGUCGCGc -5' |
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23620 | 3' | -63.3 | NC_005261.1 | + | 59256 | 0.66 | 0.550728 |
Target: 5'- gGCGCCGGC-GCCaCgCGUcGCaCGGCGUGu -3' miRNA: 3'- -CGUGGUCGuCGG-G-GCAcCG-GUCGCGC- -5' |
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23620 | 3' | -63.3 | NC_005261.1 | + | 32302 | 0.66 | 0.550728 |
Target: 5'- gGCGCCGcccccGCcGCCgCCGcGGCCgcGGCGCc -3' miRNA: 3'- -CGUGGU-----CGuCGG-GGCaCCGG--UCGCGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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