Results 101 - 120 of 512 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23620 | 3' | -63.3 | NC_005261.1 | + | 73918 | 0.66 | 0.540155 |
Target: 5'- -aGCCGGCGGCCCgacugCGUGuGCCugcuccggcuugcAGaCGCGg -3' miRNA: 3'- cgUGGUCGUCGGG-----GCAC-CGG-------------UC-GCGC- -5' |
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23620 | 3' | -63.3 | NC_005261.1 | + | 65119 | 0.66 | 0.540155 |
Target: 5'- uGCGCCAGUAGCUggucaCGcacUGcaucaccagccgcGCCAGCGCGc -3' miRNA: 3'- -CGUGGUCGUCGGg----GC---AC-------------CGGUCGCGC- -5' |
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23620 | 3' | -63.3 | NC_005261.1 | + | 55032 | 0.66 | 0.537283 |
Target: 5'- -aGCCGcCGGCCCCGcgcagcugcgcggGGCCGGCGa- -3' miRNA: 3'- cgUGGUcGUCGGGGCa------------CCGGUCGCgc -5' |
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23620 | 3' | -63.3 | NC_005261.1 | + | 47034 | 0.66 | 0.535371 |
Target: 5'- cGCGaCGGCGGCgCUGUccagaaagucccacgGGCCgAGCGCGu -3' miRNA: 3'- -CGUgGUCGUCGgGGCA---------------CCGG-UCGCGC- -5' |
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23620 | 3' | -63.3 | NC_005261.1 | + | 96703 | 0.66 | 0.535371 |
Target: 5'- gGCGacCCAGCAGcgaguuggcgggcacCaCCCG-GGCgCGGCGCGa -3' miRNA: 3'- -CGU--GGUCGUC---------------G-GGGCaCCG-GUCGCGC- -5' |
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23620 | 3' | -63.3 | NC_005261.1 | + | 31877 | 0.66 | 0.541113 |
Target: 5'- gGCGCCuucGCGcGCgCCGaGGCCGcuuacGCGCGg -3' miRNA: 3'- -CGUGGu--CGU-CGgGGCaCCGGU-----CGCGC- -5' |
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23620 | 3' | -63.3 | NC_005261.1 | + | 70680 | 0.66 | 0.549764 |
Target: 5'- cGCACCucCAGCCaggCGUccagcgcGGCCcGCGCGg -3' miRNA: 3'- -CGUGGucGUCGGg--GCA-------CCGGuCGCGC- -5' |
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23620 | 3' | -63.3 | NC_005261.1 | + | 101665 | 0.66 | 0.550728 |
Target: 5'- aGCAUCuGC-GCCUCGUaGGCCgAGCcgGCGa -3' miRNA: 3'- -CGUGGuCGuCGGGGCA-CCGG-UCG--CGC- -5' |
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23620 | 3' | -63.3 | NC_005261.1 | + | 101071 | 0.66 | 0.550728 |
Target: 5'- aGCcCCAGCAccacGCCCgCGgccGCCugcAGCGCGg -3' miRNA: 3'- -CGuGGUCGU----CGGG-GCac-CGG---UCGCGC- -5' |
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23620 | 3' | -63.3 | NC_005261.1 | + | 93751 | 0.66 | 0.550728 |
Target: 5'- cGUACuCGGCGGCCCgCGcGcGCgCGGCGUc -3' miRNA: 3'- -CGUG-GUCGUCGGG-GCaC-CG-GUCGCGc -5' |
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23620 | 3' | -63.3 | NC_005261.1 | + | 81259 | 0.66 | 0.550728 |
Target: 5'- aGCGCgAGUucuCCCCGgccGCCuGCGCGa -3' miRNA: 3'- -CGUGgUCGuc-GGGGCac-CGGuCGCGC- -5' |
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23620 | 3' | -63.3 | NC_005261.1 | + | 52671 | 0.66 | 0.550728 |
Target: 5'- cGCACUucgAGCgGGCCCUGcucGCgGGCGCGc -3' miRNA: 3'- -CGUGG---UCG-UCGGGGCac-CGgUCGCGC- -5' |
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23620 | 3' | -63.3 | NC_005261.1 | + | 46542 | 0.66 | 0.550728 |
Target: 5'- cGCGCUGGCAGUcguCCCGcagcGCgAGCGCu -3' miRNA: 3'- -CGUGGUCGUCG---GGGCac--CGgUCGCGc -5' |
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23620 | 3' | -63.3 | NC_005261.1 | + | 38692 | 0.66 | 0.550728 |
Target: 5'- cGCGCUGGCcgGGCCCaagccGGCCAGgccCGCGc -3' miRNA: 3'- -CGUGGUCG--UCGGGgca--CCGGUC---GCGC- -5' |
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23620 | 3' | -63.3 | NC_005261.1 | + | 29187 | 0.66 | 0.550728 |
Target: 5'- gGCGCCcucgccGCGGCgCCCGc-GCgGGCGCGc -3' miRNA: 3'- -CGUGGu-----CGUCG-GGGCacCGgUCGCGC- -5' |
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23620 | 3' | -63.3 | NC_005261.1 | + | 15176 | 0.66 | 0.550728 |
Target: 5'- aGCGgCGGCGGCgCCCGcGggaaacgccGCCAucGCGCGg -3' miRNA: 3'- -CGUgGUCGUCG-GGGCaC---------CGGU--CGCGC- -5' |
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23620 | 3' | -63.3 | NC_005261.1 | + | 6433 | 0.66 | 0.550728 |
Target: 5'- cGCGagGGCGGUCCgGgGGCCGGC-CGg -3' miRNA: 3'- -CGUggUCGUCGGGgCaCCGGUCGcGC- -5' |
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23620 | 3' | -63.3 | NC_005261.1 | + | 86192 | 0.66 | 0.550728 |
Target: 5'- aCACCgAGCgGGCUCCGc-GUCGGCGCGc -3' miRNA: 3'- cGUGG-UCG-UCGGGGCacCGGUCGCGC- -5' |
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23620 | 3' | -63.3 | NC_005261.1 | + | 66046 | 0.66 | 0.550728 |
Target: 5'- -gGCCacGGcCAGCCCCG-GGCCcGCGg- -3' miRNA: 3'- cgUGG--UC-GUCGGGGCaCCGGuCGCgc -5' |
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23620 | 3' | -63.3 | NC_005261.1 | + | 38595 | 0.66 | 0.550728 |
Target: 5'- -uGCUGGCGGCCCgCGgcUGGCgGGUGUu -3' miRNA: 3'- cgUGGUCGUCGGG-GC--ACCGgUCGCGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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