Results 21 - 40 of 512 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23620 | 3' | -63.3 | NC_005261.1 | + | 45415 | 0.66 | 0.560395 |
Target: 5'- uGCugCGGCGccuGCgCCCGccGCCcGCGCGc -3' miRNA: 3'- -CGugGUCGU---CG-GGGCacCGGuCGCGC- -5' |
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23620 | 3' | -63.3 | NC_005261.1 | + | 62996 | 0.66 | 0.560395 |
Target: 5'- --uCCAGcCGGCCCuCGgcGGCCGcgcccGCGCGg -3' miRNA: 3'- cguGGUC-GUCGGG-GCa-CCGGU-----CGCGC- -5' |
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23620 | 3' | -63.3 | NC_005261.1 | + | 75558 | 0.66 | 0.570108 |
Target: 5'- -uGCCGGCcauCCCCGgggcgcugGGCggCGGCGCGg -3' miRNA: 3'- cgUGGUCGuc-GGGGCa-------CCG--GUCGCGC- -5' |
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23620 | 3' | -63.3 | NC_005261.1 | + | 94261 | 0.66 | 0.570108 |
Target: 5'- gGCGCagGGCGGCgCCGcgaGGCUcuuGGCGCa -3' miRNA: 3'- -CGUGg-UCGUCGgGGCa--CCGG---UCGCGc -5' |
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23620 | 3' | -63.3 | NC_005261.1 | + | 113565 | 0.66 | 0.570108 |
Target: 5'- cCGCgAGCAGUggUCgGUGGCCGccGCGCu -3' miRNA: 3'- cGUGgUCGUCG--GGgCACCGGU--CGCGc -5' |
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23620 | 3' | -63.3 | NC_005261.1 | + | 29319 | 0.66 | 0.570108 |
Target: 5'- cGCGCCGccgccGCccGGCCgCGUGcGCUucggcGGCGCGg -3' miRNA: 3'- -CGUGGU-----CG--UCGGgGCAC-CGG-----UCGCGC- -5' |
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23620 | 3' | -63.3 | NC_005261.1 | + | 69423 | 0.66 | 0.570108 |
Target: 5'- cGCGCCGGC-GCaucaCGgagacGGgCAGCGCGg -3' miRNA: 3'- -CGUGGUCGuCGgg--GCa----CCgGUCGCGC- -5' |
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23620 | 3' | -63.3 | NC_005261.1 | + | 101449 | 0.66 | 0.570108 |
Target: 5'- cGguCCAGCgcuGGCCCCagcgccGCCGGCgGCGg -3' miRNA: 3'- -CguGGUCG---UCGGGGcac---CGGUCG-CGC- -5' |
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23620 | 3' | -63.3 | NC_005261.1 | + | 104219 | 0.66 | 0.570108 |
Target: 5'- cGCGCgCGGCGcGCaCCGUGcccuCCAGCGCc -3' miRNA: 3'- -CGUG-GUCGU-CGgGGCACc---GGUCGCGc -5' |
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23620 | 3' | -63.3 | NC_005261.1 | + | 131570 | 0.66 | 0.570108 |
Target: 5'- cGC-CCGGCuGCCCCccgcgacGGCCGaggccuacGCGCGc -3' miRNA: 3'- -CGuGGUCGuCGGGGca-----CCGGU--------CGCGC- -5' |
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23620 | 3' | -63.3 | NC_005261.1 | + | 59985 | 0.66 | 0.570108 |
Target: 5'- gGCGCCGuccGCAcCCUCG-GG-CAGCGCGa -3' miRNA: 3'- -CGUGGU---CGUcGGGGCaCCgGUCGCGC- -5' |
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23620 | 3' | -63.3 | NC_005261.1 | + | 11218 | 0.66 | 0.570108 |
Target: 5'- aCGCCGcGUGGCCCCcc-GCgGGCGCGc -3' miRNA: 3'- cGUGGU-CGUCGGGGcacCGgUCGCGC- -5' |
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23620 | 3' | -63.3 | NC_005261.1 | + | 72490 | 0.66 | 0.560395 |
Target: 5'- aGCGCCAGgAGCgCCGcgcgaaGCgGGCGCc -3' miRNA: 3'- -CGUGGUCgUCGgGGCac----CGgUCGCGc -5' |
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23620 | 3' | -63.3 | NC_005261.1 | + | 108345 | 0.66 | 0.560395 |
Target: 5'- cGCGCCAGgGccGCCgCCGUcGCaGGCGCa -3' miRNA: 3'- -CGUGGUCgU--CGG-GGCAcCGgUCGCGc -5' |
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23620 | 3' | -63.3 | NC_005261.1 | + | 127694 | 0.66 | 0.560395 |
Target: 5'- uGCcCCGGCGGCgCCGgagGaGCU-GCGCGu -3' miRNA: 3'- -CGuGGUCGUCGgGGCa--C-CGGuCGCGC- -5' |
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23620 | 3' | -63.3 | NC_005261.1 | + | 135304 | 0.66 | 0.560395 |
Target: 5'- cGCgACCGGCGugucGCCCUGggcGGCC-GUGCu -3' miRNA: 3'- -CG-UGGUCGU----CGGGGCa--CCGGuCGCGc -5' |
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23620 | 3' | -63.3 | NC_005261.1 | + | 69006 | 0.66 | 0.560395 |
Target: 5'- gGCGCC-GCGGCUUCGuUGGCgAGUccgugGCGg -3' miRNA: 3'- -CGUGGuCGUCGGGGC-ACCGgUCG-----CGC- -5' |
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23620 | 3' | -63.3 | NC_005261.1 | + | 82161 | 0.66 | 0.560395 |
Target: 5'- cGCGCCAGCaAGCgCgGcgcGGaaGGCGCGg -3' miRNA: 3'- -CGUGGUCG-UCGgGgCa--CCggUCGCGC- -5' |
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23620 | 3' | -63.3 | NC_005261.1 | + | 79848 | 0.66 | 0.566217 |
Target: 5'- aGCGCUAGCcGCCgCGcugggguugagcuUGGCCgccucggcccacagGGCGCGc -3' miRNA: 3'- -CGUGGUCGuCGGgGC-------------ACCGG--------------UCGCGC- -5' |
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23620 | 3' | -63.3 | NC_005261.1 | + | 66752 | 0.66 | 0.570108 |
Target: 5'- uGCACgGGCuGGUCCaccggguGUGGCCcgucGCGCGc -3' miRNA: 3'- -CGUGgUCG-UCGGGg------CACCGGu---CGCGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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