miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23621 3' -50.7 NC_005261.1 + 22693 0.66 0.994251
Target:  5'- gGGaCGGGCCCGGcgacgaggccGUCGAGGAg------ -3'
miRNA:   3'- -CC-GCCUGGGCU----------CAGCUCUUacaaaug -5'
23621 3' -50.7 NC_005261.1 + 71080 0.66 0.993345
Target:  5'- gGGCGGGgcgUCCGGGccCGAGAAggcgUACa -3'
miRNA:   3'- -CCGCCU---GGGCUCa-GCUCUUacaaAUG- -5'
23621 3' -50.7 NC_005261.1 + 68590 0.66 0.993345
Target:  5'- aGGCGGGCCgCGGGagCGGGGccGacgGCg -3'
miRNA:   3'- -CCGCCUGG-GCUCa-GCUCUuaCaaaUG- -5'
23621 3' -50.7 NC_005261.1 + 41116 0.67 0.988523
Target:  5'- cGGCGGGCCCGAG-CGcuuccuGcGUGgc-GCg -3'
miRNA:   3'- -CCGCCUGGGCUCaGCu-----CuUACaaaUG- -5'
23621 3' -50.7 NC_005261.1 + 41979 0.67 0.986972
Target:  5'- aGGUGGACUCGAGa-GAGucgGUcUGCg -3'
miRNA:   3'- -CCGCCUGGGCUCagCUCuuaCAaAUG- -5'
23621 3' -50.7 NC_005261.1 + 117871 0.67 0.985265
Target:  5'- gGGgGGACCCGGGacCGGccAUGUUcGCg -3'
miRNA:   3'- -CCgCCUGGGCUCa-GCUcuUACAAaUG- -5'
23621 3' -50.7 NC_005261.1 + 10023 0.68 0.979114
Target:  5'- gGGCGGGCCuCGcGUCGGGGGc------ -3'
miRNA:   3'- -CCGCCUGG-GCuCAGCUCUUacaaaug -5'
23621 3' -50.7 NC_005261.1 + 5220 0.68 0.978881
Target:  5'- cGCGGACUCGAugaggucguacagGUCGAGcGUGgccgGCu -3'
miRNA:   3'- cCGCCUGGGCU-------------CAGCUCuUACaaa-UG- -5'
23621 3' -50.7 NC_005261.1 + 9611 0.68 0.971239
Target:  5'- -uCGGGCCCGGGgugggcaggCGGGggUGgggGCu -3'
miRNA:   3'- ccGCCUGGGCUCa--------GCUCuuACaaaUG- -5'
23621 3' -50.7 NC_005261.1 + 22777 0.69 0.961427
Target:  5'- gGGCGGGCCCcg--CGAGAAggggGUUgucGCg -3'
miRNA:   3'- -CCGCCUGGGcucaGCUCUUa---CAAa--UG- -5'
23621 3' -50.7 NC_005261.1 + 35169 0.69 0.953725
Target:  5'- uGCGGACCCGAGcgcaGAGAAg------ -3'
miRNA:   3'- cCGCCUGGGCUCag--CUCUUacaaaug -5'
23621 3' -50.7 NC_005261.1 + 55218 0.7 0.940333
Target:  5'- cGGCGG-CCCGAGgcggCGAGGGcGgcaGCa -3'
miRNA:   3'- -CCGCCuGGGCUCa---GCUCUUaCaaaUG- -5'
23621 3' -50.7 NC_005261.1 + 71626 0.71 0.924665
Target:  5'- cGCGGGCCCGGGcggCGGGAAa------ -3'
miRNA:   3'- cCGCCUGGGCUCa--GCUCUUacaaaug -5'
23621 3' -50.7 NC_005261.1 + 57853 0.71 0.924665
Target:  5'- gGGCGGcaaggccucggcGCUCGGGUCGGGAA-GUcgGCc -3'
miRNA:   3'- -CCGCC------------UGGGCUCAGCUCUUaCAaaUG- -5'
23621 3' -50.7 NC_005261.1 + 12748 0.71 0.918932
Target:  5'- gGGCGGGCCCGgcgaGGUCGuAGGcgGcggugGCg -3'
miRNA:   3'- -CCGCCUGGGC----UCAGC-UCUuaCaaa--UG- -5'
23621 3' -50.7 NC_005261.1 + 13705 0.71 0.918932
Target:  5'- gGGCGGGCUgGGGgCGGGggUGg---- -3'
miRNA:   3'- -CCGCCUGGgCUCaGCUCuuACaaaug -5'
23621 3' -50.7 NC_005261.1 + 56139 0.72 0.85618
Target:  5'- cGGgGGGCgCGGGcCGAGggUGgcgGCa -3'
miRNA:   3'- -CCgCCUGgGCUCaGCUCuuACaaaUG- -5'
23621 3' -50.7 NC_005261.1 + 13099 0.73 0.848047
Target:  5'- cGGCGGGCUCGGcUCGGGGGcGUcgGCg -3'
miRNA:   3'- -CCGCCUGGGCUcAGCUCUUaCAaaUG- -5'
23621 3' -50.7 NC_005261.1 + 24116 0.75 0.736575
Target:  5'- -cCGGGCCCGAGgCGGGggUGgggGCu -3'
miRNA:   3'- ccGCCUGGGCUCaGCUCuuACaaaUG- -5'
23621 3' -50.7 NC_005261.1 + 78305 1.01 0.03029
Target:  5'- aGGCGaGCCCGAGUCGAGAAUGUUUACg -3'
miRNA:   3'- -CCGCcUGGGCUCAGCUCUUACAAAUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.