miRNA display CGI


Results 1 - 20 of 225 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23622 3' -62.5 NC_005261.1 + 136788 0.66 0.60616
Target:  5'- gGCGAGGCGgUgcaGGC-CaGugGCggGCUCg -3'
miRNA:   3'- -CGCUCCGCgA---CCGcGcCugCGa-CGAG- -5'
23622 3' -62.5 NC_005261.1 + 38276 0.66 0.60616
Target:  5'- -gGGGGCgGCUGGUGCacGCGgUGCUg -3'
miRNA:   3'- cgCUCCG-CGACCGCGccUGCgACGAg -5'
23622 3' -62.5 NC_005261.1 + 14944 0.66 0.60616
Target:  5'- aGCu-GGCGCUGGaagcgaGCGGGCGUgccugggGCg- -3'
miRNA:   3'- -CGcuCCGCGACCg-----CGCCUGCGa------CGag -5'
23622 3' -62.5 NC_005261.1 + 52965 0.66 0.60616
Target:  5'- aGCGccGCGCcGGUGCGG-CGCcgGCa- -3'
miRNA:   3'- -CGCucCGCGaCCGCGCCuGCGa-CGag -5'
23622 3' -62.5 NC_005261.1 + 97678 0.66 0.60616
Target:  5'- cGCGGGGC-UUGG-GCGGG-GCUGC-Cg -3'
miRNA:   3'- -CGCUCCGcGACCgCGCCUgCGACGaG- -5'
23622 3' -62.5 NC_005261.1 + 10423 0.66 0.60616
Target:  5'- aCG-GGUGCUGuGCccaCGGACGCgUGCUg -3'
miRNA:   3'- cGCuCCGCGAC-CGc--GCCUGCG-ACGAg -5'
23622 3' -62.5 NC_005261.1 + 80299 0.66 0.60616
Target:  5'- uGCGuGGCGUUGaaGCGCucacgguaGACGC-GCUCg -3'
miRNA:   3'- -CGCuCCGCGAC--CGCGc-------CUGCGaCGAG- -5'
23622 3' -62.5 NC_005261.1 + 132557 0.66 0.60616
Target:  5'- gGCGAGGCGCaguacGGCuGCGaaGACGUcgGCg- -3'
miRNA:   3'- -CGCUCCGCGa----CCG-CGC--CUGCGa-CGag -5'
23622 3' -62.5 NC_005261.1 + 133618 0.66 0.60616
Target:  5'- ----cGCGCUGGCGCuguGGGcCGC-GCUCg -3'
miRNA:   3'- cgcucCGCGACCGCG---CCU-GCGaCGAG- -5'
23622 3' -62.5 NC_005261.1 + 144 0.66 0.604182
Target:  5'- cGCGGGGCuggcaggGCUGGCggaguugGCGGggcugGCGCcccuggUGCUCc -3'
miRNA:   3'- -CGCUCCG-------CGACCG-------CGCC-----UGCG------ACGAG- -5'
23622 3' -62.5 NC_005261.1 + 137827 0.66 0.604182
Target:  5'- cGCGGGGCuggcaggGCUGGCggaguugGCGGggcugGCGCcccuggUGCUCc -3'
miRNA:   3'- -CGCUCCG-------CGACCG-------CGCC-----UGCG------ACGAG- -5'
23622 3' -62.5 NC_005261.1 + 17748 0.66 0.59628
Target:  5'- aGCG-GGCGgacuuCUGGgGCGGugGUgGCgUCa -3'
miRNA:   3'- -CGCuCCGC-----GACCgCGCCugCGaCG-AG- -5'
23622 3' -62.5 NC_005261.1 + 1199 0.66 0.59628
Target:  5'- gGCcGGGCGC-GGCGCGGAcccccCGCcgaUGC-Cg -3'
miRNA:   3'- -CGcUCCGCGaCCGCGCCU-----GCG---ACGaG- -5'
23622 3' -62.5 NC_005261.1 + 34206 0.66 0.59628
Target:  5'- gGCaGAcGGCGCgucGGaCGCGGACGCagacGCg- -3'
miRNA:   3'- -CG-CU-CCGCGa--CC-GCGCCUGCGa---CGag -5'
23622 3' -62.5 NC_005261.1 + 125097 0.66 0.59628
Target:  5'- uGCGGGGCGCccccuucCG-GGGCGC-GCUCg -3'
miRNA:   3'- -CGCUCCGCGacc----GCgCCUGCGaCGAG- -5'
23622 3' -62.5 NC_005261.1 + 136386 0.66 0.59628
Target:  5'- aCGAGGUGCcgggacugGGgGCGGACGUgGUg- -3'
miRNA:   3'- cGCUCCGCGa-------CCgCGCCUGCGaCGag -5'
23622 3' -62.5 NC_005261.1 + 101140 0.66 0.592334
Target:  5'- cGCGAGGCuGCc-GCGCGGcgGCGCgccgccgcgaagaGCUCc -3'
miRNA:   3'- -CGCUCCG-CGacCGCGCC--UGCGa------------CGAG- -5'
23622 3' -62.5 NC_005261.1 + 103915 0.66 0.586424
Target:  5'- cGCGccgccaggucGGGCGC-GGCGUcugccaGACGCUGCa- -3'
miRNA:   3'- -CGC----------UCCGCGaCCGCGc-----CUGCGACGag -5'
23622 3' -62.5 NC_005261.1 + 16551 0.66 0.586424
Target:  5'- cGUGAGGUaCgucaGGCGCaGGACcUUGCUCu -3'
miRNA:   3'- -CGCUCCGcGa---CCGCG-CCUGcGACGAG- -5'
23622 3' -62.5 NC_005261.1 + 137774 0.66 0.586424
Target:  5'- uGCGGGGCGCgcccccgGGCcccgccgcccGCGccGGCGCcgccccuggUGCUCg -3'
miRNA:   3'- -CGCUCCGCGa------CCG----------CGC--CUGCG---------ACGAG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.