Results 21 - 40 of 225 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23622 | 3' | -62.5 | NC_005261.1 | + | 137774 | 0.66 | 0.586424 |
Target: 5'- uGCGGGGCGCgcccccgGGCcccgccgcccGCGccGGCGCcgccccuggUGCUCg -3' miRNA: 3'- -CGCUCCGCGa------CCG----------CGC--CUGCG---------ACGAG- -5' |
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23622 | 3' | -62.5 | NC_005261.1 | + | 16551 | 0.66 | 0.586424 |
Target: 5'- cGUGAGGUaCgucaGGCGCaGGACcUUGCUCu -3' miRNA: 3'- -CGCUCCGcGa---CCGCG-CCUGcGACGAG- -5' |
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23622 | 3' | -62.5 | NC_005261.1 | + | 38276 | 0.66 | 0.60616 |
Target: 5'- -gGGGGCgGCUGGUGCacGCGgUGCUg -3' miRNA: 3'- cgCUCCG-CGACCGCGccUGCgACGAg -5' |
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23622 | 3' | -62.5 | NC_005261.1 | + | 14944 | 0.66 | 0.60616 |
Target: 5'- aGCu-GGCGCUGGaagcgaGCGGGCGUgccugggGCg- -3' miRNA: 3'- -CGcuCCGCGACCg-----CGCCUGCGa------CGag -5' |
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23622 | 3' | -62.5 | NC_005261.1 | + | 52965 | 0.66 | 0.60616 |
Target: 5'- aGCGccGCGCcGGUGCGG-CGCcgGCa- -3' miRNA: 3'- -CGCucCGCGaCCGCGCCuGCGa-CGag -5' |
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23622 | 3' | -62.5 | NC_005261.1 | + | 97678 | 0.66 | 0.60616 |
Target: 5'- cGCGGGGC-UUGG-GCGGG-GCUGC-Cg -3' miRNA: 3'- -CGCUCCGcGACCgCGCCUgCGACGaG- -5' |
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23622 | 3' | -62.5 | NC_005261.1 | + | 10423 | 0.66 | 0.60616 |
Target: 5'- aCG-GGUGCUGuGCccaCGGACGCgUGCUg -3' miRNA: 3'- cGCuCCGCGAC-CGc--GCCUGCG-ACGAg -5' |
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23622 | 3' | -62.5 | NC_005261.1 | + | 80299 | 0.66 | 0.60616 |
Target: 5'- uGCGuGGCGUUGaaGCGCucacgguaGACGC-GCUCg -3' miRNA: 3'- -CGCuCCGCGAC--CGCGc-------CUGCGaCGAG- -5' |
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23622 | 3' | -62.5 | NC_005261.1 | + | 132557 | 0.66 | 0.60616 |
Target: 5'- gGCGAGGCGCaguacGGCuGCGaaGACGUcgGCg- -3' miRNA: 3'- -CGCUCCGCGa----CCG-CGC--CUGCGa-CGag -5' |
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23622 | 3' | -62.5 | NC_005261.1 | + | 133618 | 0.66 | 0.60616 |
Target: 5'- ----cGCGCUGGCGCuguGGGcCGC-GCUCg -3' miRNA: 3'- cgcucCGCGACCGCG---CCU-GCGaCGAG- -5' |
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23622 | 3' | -62.5 | NC_005261.1 | + | 137827 | 0.66 | 0.604182 |
Target: 5'- cGCGGGGCuggcaggGCUGGCggaguugGCGGggcugGCGCcccuggUGCUCc -3' miRNA: 3'- -CGCUCCG-------CGACCG-------CGCC-----UGCG------ACGAG- -5' |
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23622 | 3' | -62.5 | NC_005261.1 | + | 144 | 0.66 | 0.604182 |
Target: 5'- cGCGGGGCuggcaggGCUGGCggaguugGCGGggcugGCGCcccuggUGCUCc -3' miRNA: 3'- -CGCUCCG-------CGACCG-------CGCC-----UGCG------ACGAG- -5' |
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23622 | 3' | -62.5 | NC_005261.1 | + | 103915 | 0.66 | 0.586424 |
Target: 5'- cGCGccgccaggucGGGCGC-GGCGUcugccaGACGCUGCa- -3' miRNA: 3'- -CGC----------UCCGCGaCCGCGc-----CUGCGACGag -5' |
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23622 | 3' | -62.5 | NC_005261.1 | + | 111983 | 0.66 | 0.586424 |
Target: 5'- gGCGGGGCGCUggaguccaugGGCcaguucuucguGCGGAuCGCcGCa- -3' miRNA: 3'- -CGCUCCGCGA----------CCG-----------CGCCU-GCGaCGag -5' |
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23622 | 3' | -62.5 | NC_005261.1 | + | 101140 | 0.66 | 0.592334 |
Target: 5'- cGCGAGGCuGCc-GCGCGGcgGCGCgccgccgcgaagaGCUCc -3' miRNA: 3'- -CGCUCCG-CGacCGCGCC--UGCGa------------CGAG- -5' |
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23622 | 3' | -62.5 | NC_005261.1 | + | 17748 | 0.66 | 0.59628 |
Target: 5'- aGCG-GGCGgacuuCUGGgGCGGugGUgGCgUCa -3' miRNA: 3'- -CGCuCCGC-----GACCgCGCCugCGaCG-AG- -5' |
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23622 | 3' | -62.5 | NC_005261.1 | + | 1199 | 0.66 | 0.59628 |
Target: 5'- gGCcGGGCGC-GGCGCGGAcccccCGCcgaUGC-Cg -3' miRNA: 3'- -CGcUCCGCGaCCGCGCCU-----GCG---ACGaG- -5' |
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23622 | 3' | -62.5 | NC_005261.1 | + | 34206 | 0.66 | 0.59628 |
Target: 5'- gGCaGAcGGCGCgucGGaCGCGGACGCagacGCg- -3' miRNA: 3'- -CG-CU-CCGCGa--CC-GCGCCUGCGa---CGag -5' |
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23622 | 3' | -62.5 | NC_005261.1 | + | 125097 | 0.66 | 0.59628 |
Target: 5'- uGCGGGGCGCccccuucCG-GGGCGC-GCUCg -3' miRNA: 3'- -CGCUCCGCGacc----GCgCCUGCGaCGAG- -5' |
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23622 | 3' | -62.5 | NC_005261.1 | + | 136386 | 0.66 | 0.59628 |
Target: 5'- aCGAGGUGCcgggacugGGgGCGGACGUgGUg- -3' miRNA: 3'- cGCUCCGCGa-------CCgCGCCUGCGaCGag -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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