Results 1 - 20 of 225 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23622 | 3' | -62.5 | NC_005261.1 | + | 77081 | 1.1 | 0.000506 |
Target: 5'- cGCGAGGCGCUGGCGCGGACGCUGCUCu -3' miRNA: 3'- -CGCUCCGCGACCGCGCCUGCGACGAG- -5' |
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23622 | 3' | -62.5 | NC_005261.1 | + | 118390 | 0.82 | 0.060997 |
Target: 5'- cCGAGGCGCUGGCggccGCGGGCGCcGCa- -3' miRNA: 3'- cGCUCCGCGACCG----CGCCUGCGaCGag -5' |
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23622 | 3' | -62.5 | NC_005261.1 | + | 69532 | 0.8 | 0.083293 |
Target: 5'- gGCGcGGGCGCUGGCGCGcGCGCUGg-- -3' miRNA: 3'- -CGC-UCCGCGACCGCGCcUGCGACgag -5' |
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23622 | 3' | -62.5 | NC_005261.1 | + | 132623 | 0.79 | 0.087697 |
Target: 5'- -gGGGGCGCUGGCGCcgaGGACGCggGCg- -3' miRNA: 3'- cgCUCCGCGACCGCG---CCUGCGa-CGag -5' |
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23622 | 3' | -62.5 | NC_005261.1 | + | 123169 | 0.78 | 0.107623 |
Target: 5'- gGCGGGcGCGCgGGCGUGGugGCUGgUg -3' miRNA: 3'- -CGCUC-CGCGaCCGCGCCugCGACgAg -5' |
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23622 | 3' | -62.5 | NC_005261.1 | + | 29958 | 0.78 | 0.102275 |
Target: 5'- cGCGAGGCGCUagaggcGGCGCGGuGCGCcGC-Cg -3' miRNA: 3'- -CGCUCCGCGA------CCGCGCC-UGCGaCGaG- -5' |
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23622 | 3' | -62.5 | NC_005261.1 | + | 75570 | 0.78 | 0.104917 |
Target: 5'- cCGGGGCGCUGG-GCGGcgGCGCggcGCUCg -3' miRNA: 3'- cGCUCCGCGACCgCGCC--UGCGa--CGAG- -5' |
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23622 | 3' | -62.5 | NC_005261.1 | + | 109206 | 0.78 | 0.116139 |
Target: 5'- uGCGcAGGCGCUcguaGGCGCGGcacgccgcGCGCUGCa- -3' miRNA: 3'- -CGC-UCCGCGA----CCGCGCC--------UGCGACGag -5' |
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23622 | 3' | -62.5 | NC_005261.1 | + | 74930 | 0.77 | 0.12528 |
Target: 5'- gGCGAGGacggggacUGC-GGCGCGGGCGC-GCUCg -3' miRNA: 3'- -CGCUCC--------GCGaCCGCGCCUGCGaCGAG- -5' |
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23622 | 3' | -62.5 | NC_005261.1 | + | 75503 | 0.77 | 0.135084 |
Target: 5'- cGCGGGGCGCUGGaggcgcacgcCGUGGucgccGCGCUGCa- -3' miRNA: 3'- -CGCUCCGCGACC----------GCGCC-----UGCGACGag -5' |
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23622 | 3' | -62.5 | NC_005261.1 | + | 23422 | 0.77 | 0.135084 |
Target: 5'- gGCGAGGCGCUGcGCGUcgGGGCGCcagucCUCa -3' miRNA: 3'- -CGCUCCGCGAC-CGCG--CCUGCGac---GAG- -5' |
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23622 | 3' | -62.5 | NC_005261.1 | + | 12758 | 0.77 | 0.13174 |
Target: 5'- gGCGAGGuCGUaGGCgGCGGugGCgggggGCUCg -3' miRNA: 3'- -CGCUCC-GCGaCCG-CGCCugCGa----CGAG- -5' |
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23622 | 3' | -62.5 | NC_005261.1 | + | 31591 | 0.76 | 0.156835 |
Target: 5'- cGUGAGcGCGCUcGGCGCgcaGGGCgugcuGCUGCUCg -3' miRNA: 3'- -CGCUC-CGCGA-CCGCG---CCUG-----CGACGAG- -5' |
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23622 | 3' | -62.5 | NC_005261.1 | + | 21627 | 0.76 | 0.142007 |
Target: 5'- gGCGAGGgucccCGCcccGGCGCGGACGCcGCUg -3' miRNA: 3'- -CGCUCC-----GCGa--CCGCGCCUGCGaCGAg -5' |
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23622 | 3' | -62.5 | NC_005261.1 | + | 118683 | 0.76 | 0.160755 |
Target: 5'- gGCG-GGCGCUGGCGCacGCGCggcgugguccUGCUCa -3' miRNA: 3'- -CGCuCCGCGACCGCGccUGCG----------ACGAG- -5' |
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23622 | 3' | -62.5 | NC_005261.1 | + | 126948 | 0.75 | 0.186176 |
Target: 5'- -aGGGGCGCcgGGCGCGGGgGCgGCa- -3' miRNA: 3'- cgCUCCGCGa-CCGCGCCUgCGaCGag -5' |
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23622 | 3' | -62.5 | NC_005261.1 | + | 13681 | 0.75 | 0.173049 |
Target: 5'- cGCGGGGCGCgcgGGCGUGGgGCGggGCg- -3' miRNA: 3'- -CGCUCCGCGa--CCGCGCC-UGCgaCGag -5' |
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23622 | 3' | -62.5 | NC_005261.1 | + | 133823 | 0.75 | 0.17733 |
Target: 5'- aCGAGGCGCU-GCGCGGcCGCgUGCg- -3' miRNA: 3'- cGCUCCGCGAcCGCGCCuGCG-ACGag -5' |
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23622 | 3' | -62.5 | NC_005261.1 | + | 98352 | 0.75 | 0.17733 |
Target: 5'- cGCGGGG-GCgGGgGUGGGCGCggGCUCu -3' miRNA: 3'- -CGCUCCgCGaCCgCGCCUGCGa-CGAG- -5' |
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23622 | 3' | -62.5 | NC_005261.1 | + | 90745 | 0.75 | 0.187536 |
Target: 5'- cUGAGGCGCUGGCGCGGgacuuccccgaggccGCcgaggccGCUGCg- -3' miRNA: 3'- cGCUCCGCGACCGCGCC---------------UG-------CGACGag -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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