miRNA display CGI


Results 1 - 20 of 225 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23622 3' -62.5 NC_005261.1 + 77081 1.1 0.000506
Target:  5'- cGCGAGGCGCUGGCGCGGACGCUGCUCu -3'
miRNA:   3'- -CGCUCCGCGACCGCGCCUGCGACGAG- -5'
23622 3' -62.5 NC_005261.1 + 118390 0.82 0.060997
Target:  5'- cCGAGGCGCUGGCggccGCGGGCGCcGCa- -3'
miRNA:   3'- cGCUCCGCGACCG----CGCCUGCGaCGag -5'
23622 3' -62.5 NC_005261.1 + 69532 0.8 0.083293
Target:  5'- gGCGcGGGCGCUGGCGCGcGCGCUGg-- -3'
miRNA:   3'- -CGC-UCCGCGACCGCGCcUGCGACgag -5'
23622 3' -62.5 NC_005261.1 + 132623 0.79 0.087697
Target:  5'- -gGGGGCGCUGGCGCcgaGGACGCggGCg- -3'
miRNA:   3'- cgCUCCGCGACCGCG---CCUGCGa-CGag -5'
23622 3' -62.5 NC_005261.1 + 29958 0.78 0.102275
Target:  5'- cGCGAGGCGCUagaggcGGCGCGGuGCGCcGC-Cg -3'
miRNA:   3'- -CGCUCCGCGA------CCGCGCC-UGCGaCGaG- -5'
23622 3' -62.5 NC_005261.1 + 75570 0.78 0.104917
Target:  5'- cCGGGGCGCUGG-GCGGcgGCGCggcGCUCg -3'
miRNA:   3'- cGCUCCGCGACCgCGCC--UGCGa--CGAG- -5'
23622 3' -62.5 NC_005261.1 + 123169 0.78 0.107623
Target:  5'- gGCGGGcGCGCgGGCGUGGugGCUGgUg -3'
miRNA:   3'- -CGCUC-CGCGaCCGCGCCugCGACgAg -5'
23622 3' -62.5 NC_005261.1 + 109206 0.78 0.116139
Target:  5'- uGCGcAGGCGCUcguaGGCGCGGcacgccgcGCGCUGCa- -3'
miRNA:   3'- -CGC-UCCGCGA----CCGCGCC--------UGCGACGag -5'
23622 3' -62.5 NC_005261.1 + 74930 0.77 0.12528
Target:  5'- gGCGAGGacggggacUGC-GGCGCGGGCGC-GCUCg -3'
miRNA:   3'- -CGCUCC--------GCGaCCGCGCCUGCGaCGAG- -5'
23622 3' -62.5 NC_005261.1 + 12758 0.77 0.13174
Target:  5'- gGCGAGGuCGUaGGCgGCGGugGCgggggGCUCg -3'
miRNA:   3'- -CGCUCC-GCGaCCG-CGCCugCGa----CGAG- -5'
23622 3' -62.5 NC_005261.1 + 23422 0.77 0.135084
Target:  5'- gGCGAGGCGCUGcGCGUcgGGGCGCcagucCUCa -3'
miRNA:   3'- -CGCUCCGCGAC-CGCG--CCUGCGac---GAG- -5'
23622 3' -62.5 NC_005261.1 + 75503 0.77 0.135084
Target:  5'- cGCGGGGCGCUGGaggcgcacgcCGUGGucgccGCGCUGCa- -3'
miRNA:   3'- -CGCUCCGCGACC----------GCGCC-----UGCGACGag -5'
23622 3' -62.5 NC_005261.1 + 21627 0.76 0.142007
Target:  5'- gGCGAGGgucccCGCcccGGCGCGGACGCcGCUg -3'
miRNA:   3'- -CGCUCC-----GCGa--CCGCGCCUGCGaCGAg -5'
23622 3' -62.5 NC_005261.1 + 31591 0.76 0.156835
Target:  5'- cGUGAGcGCGCUcGGCGCgcaGGGCgugcuGCUGCUCg -3'
miRNA:   3'- -CGCUC-CGCGA-CCGCG---CCUG-----CGACGAG- -5'
23622 3' -62.5 NC_005261.1 + 118683 0.76 0.160755
Target:  5'- gGCG-GGCGCUGGCGCacGCGCggcgugguccUGCUCa -3'
miRNA:   3'- -CGCuCCGCGACCGCGccUGCG----------ACGAG- -5'
23622 3' -62.5 NC_005261.1 + 13681 0.75 0.173049
Target:  5'- cGCGGGGCGCgcgGGCGUGGgGCGggGCg- -3'
miRNA:   3'- -CGCUCCGCGa--CCGCGCC-UGCgaCGag -5'
23622 3' -62.5 NC_005261.1 + 133823 0.75 0.17733
Target:  5'- aCGAGGCGCU-GCGCGGcCGCgUGCg- -3'
miRNA:   3'- cGCUCCGCGAcCGCGCCuGCG-ACGag -5'
23622 3' -62.5 NC_005261.1 + 98352 0.75 0.17733
Target:  5'- cGCGGGG-GCgGGgGUGGGCGCggGCUCu -3'
miRNA:   3'- -CGCUCCgCGaCCgCGCCUGCGa-CGAG- -5'
23622 3' -62.5 NC_005261.1 + 126948 0.75 0.186176
Target:  5'- -aGGGGCGCcgGGCGCGGGgGCgGCa- -3'
miRNA:   3'- cgCUCCGCGa-CCGCGCCUgCGaCGag -5'
23622 3' -62.5 NC_005261.1 + 90745 0.75 0.187536
Target:  5'- cUGAGGCGCUGGCGCGGgacuuccccgaggccGCcgaggccGCUGCg- -3'
miRNA:   3'- cGCUCCGCGACCGCGCC---------------UG-------CGACGag -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.