miRNA display CGI


Results 21 - 40 of 225 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23622 3' -62.5 NC_005261.1 + 28872 0.74 0.190743
Target:  5'- uUGAGGCuGC-GGCGCGGACGCcGC-Cg -3'
miRNA:   3'- cGCUCCG-CGaCCGCGCCUGCGaCGaG- -5'
23622 3' -62.5 NC_005261.1 + 28769 0.74 0.200172
Target:  5'- -gGGGGCGCcugggccgcGGCGCGGGCGCUcGCg- -3'
miRNA:   3'- cgCUCCGCGa--------CCGCGCCUGCGA-CGag -5'
23622 3' -62.5 NC_005261.1 + 71959 0.74 0.200172
Target:  5'- gGCGucGGCGCggGGCGCGGAgCGCgcgGCa- -3'
miRNA:   3'- -CGCu-CCGCGa-CCGCGCCU-GCGa--CGag -5'
23622 3' -62.5 NC_005261.1 + 121111 0.74 0.200172
Target:  5'- uGCGgguccucuaGGGCGCggaGGCGCGGGCGCgaGCg- -3'
miRNA:   3'- -CGC---------UCCGCGa--CCGCGCCUGCGa-CGag -5'
23622 3' -62.5 NC_005261.1 + 133540 0.73 0.22025
Target:  5'- uCGGGGCGCgcaGCGCaGcAUGCUGCUCg -3'
miRNA:   3'- cGCUCCGCGac-CGCGcC-UGCGACGAG- -5'
23622 3' -62.5 NC_005261.1 + 130637 0.73 0.225531
Target:  5'- cGCGGGGCGCgcguGCGCucgccgacGCGCUGCUCc -3'
miRNA:   3'- -CGCUCCGCGac--CGCGcc------UGCGACGAG- -5'
23622 3' -62.5 NC_005261.1 + 534 0.73 0.230919
Target:  5'- gGCGGGGgGCaGG-GCGGACGgCgGCUCg -3'
miRNA:   3'- -CGCUCCgCGaCCgCGCCUGC-GaCGAG- -5'
23622 3' -62.5 NC_005261.1 + 2548 0.73 0.230919
Target:  5'- aGCGccgcGGCGCUgGGCGCGGGCGUgugGUa- -3'
miRNA:   3'- -CGCu---CCGCGA-CCGCGCCUGCGa--CGag -5'
23622 3' -62.5 NC_005261.1 + 138205 0.73 0.230919
Target:  5'- gGCGGGGgGCaGG-GCGGACGgCgGCUCg -3'
miRNA:   3'- -CGCUCCgCGaCCgCGCCUGC-GaCGAG- -5'
23622 3' -62.5 NC_005261.1 + 62897 0.73 0.236416
Target:  5'- cGCGAGGCGgggcGGgGCGGACGC-GCg- -3'
miRNA:   3'- -CGCUCCGCga--CCgCGCCUGCGaCGag -5'
23622 3' -62.5 NC_005261.1 + 43809 0.73 0.236416
Target:  5'- -gGGGGCGCcgGGCGCgcccuccguGGAgaaGCUGCUCg -3'
miRNA:   3'- cgCUCCGCGa-CCGCG---------CCUg--CGACGAG- -5'
23622 3' -62.5 NC_005261.1 + 3896 0.73 0.236416
Target:  5'- gGCGA-GCGC-GGCGCGGGCGCccGCg- -3'
miRNA:   3'- -CGCUcCGCGaCCGCGCCUGCGa-CGag -5'
23622 3' -62.5 NC_005261.1 + 81350 0.73 0.236416
Target:  5'- gGCGGGGCGggGGCuuGCGGgggGCGCcggGCUCg -3'
miRNA:   3'- -CGCUCCGCgaCCG--CGCC---UGCGa--CGAG- -5'
23622 3' -62.5 NC_005261.1 + 118218 0.73 0.242021
Target:  5'- cGCGGGGCGCUgacGGcCGCGGcCGCgGCc- -3'
miRNA:   3'- -CGCUCCGCGA---CC-GCGCCuGCGaCGag -5'
23622 3' -62.5 NC_005261.1 + 67062 0.73 0.242021
Target:  5'- gGCG-GGCGC--GCGCGGGgGCUcGCUCg -3'
miRNA:   3'- -CGCuCCGCGacCGCGCCUgCGA-CGAG- -5'
23622 3' -62.5 NC_005261.1 + 98194 0.73 0.242021
Target:  5'- -gGGGGCGCggcgGGCaGCGGGCGCcGC-Ca -3'
miRNA:   3'- cgCUCCGCGa---CCG-CGCCUGCGaCGaG- -5'
23622 3' -62.5 NC_005261.1 + 94168 0.72 0.259503
Target:  5'- cGCGaAGGCGCccaccagcgUGGCGCGGuGCGCgGC-Ca -3'
miRNA:   3'- -CGC-UCCGCG---------ACCGCGCC-UGCGaCGaG- -5'
23622 3' -62.5 NC_005261.1 + 73485 0.72 0.259503
Target:  5'- cCGcGGCGCgGcGCGCGGACGCgGCg- -3'
miRNA:   3'- cGCuCCGCGaC-CGCGCCUGCGaCGag -5'
23622 3' -62.5 NC_005261.1 + 68286 0.72 0.264945
Target:  5'- gGCGGGGCcccggccGCgGGCGCGGACcuCUGCg- -3'
miRNA:   3'- -CGCUCCG-------CGaCCGCGCCUGc-GACGag -5'
23622 3' -62.5 NC_005261.1 + 98745 0.72 0.265555
Target:  5'- cGCGcGGGCGUUGGCcgcGCGGuugcCGCUGC-Cg -3'
miRNA:   3'- -CGC-UCCGCGACCG---CGCCu---GCGACGaG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.