miRNA display CGI


Results 41 - 60 of 225 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23622 3' -62.5 NC_005261.1 + 135426 0.72 0.27422
Target:  5'- uCGAGGUGCgcucGcacgccgcccaggcgGCGCGGGCGCUGCg- -3'
miRNA:   3'- cGCUCCGCGa---C---------------CGCGCCUGCGACGag -5'
23622 3' -62.5 NC_005261.1 + 97148 0.72 0.284398
Target:  5'- -gGAGGCGCUGGCGCcGGCccgGCcgGCUg -3'
miRNA:   3'- cgCUCCGCGACCGCGcCUG---CGa-CGAg -5'
23622 3' -62.5 NC_005261.1 + 21192 0.72 0.284398
Target:  5'- cGCGA-GCGC-GGcCGCGGACGCUGg-- -3'
miRNA:   3'- -CGCUcCGCGaCC-GCGCCUGCGACgag -5'
23622 3' -62.5 NC_005261.1 + 97226 0.72 0.284398
Target:  5'- -gGAGGCGCUGGCGCcGGCccgGCcgGCUg -3'
miRNA:   3'- cgCUCCGCGACCGCGcCUG---CGa-CGAg -5'
23622 3' -62.5 NC_005261.1 + 77664 0.72 0.290909
Target:  5'- gGCGccugcAGGCGCagGGCGCGGACGggccggGCUa -3'
miRNA:   3'- -CGC-----UCCGCGa-CCGCGCCUGCga----CGAg -5'
23622 3' -62.5 NC_005261.1 + 130515 0.72 0.290909
Target:  5'- gGCGcAGGCGCUGGC-CGaaGCGCgcccGCUCg -3'
miRNA:   3'- -CGC-UCCGCGACCGcGCc-UGCGa---CGAG- -5'
23622 3' -62.5 NC_005261.1 + 32366 0.72 0.290909
Target:  5'- cGCGGGaGaCGCUGGUGCaGGCGCgGCg- -3'
miRNA:   3'- -CGCUC-C-GCGACCGCGcCUGCGaCGag -5'
23622 3' -62.5 NC_005261.1 + 89099 0.72 0.290909
Target:  5'- cCGGGcGCGCUGGCGCGcGCGUgGCa- -3'
miRNA:   3'- cGCUC-CGCGACCGCGCcUGCGaCGag -5'
23622 3' -62.5 NC_005261.1 + 68688 0.72 0.290909
Target:  5'- cGCGuGGGgGCcGGCGCGGACGacgGCg- -3'
miRNA:   3'- -CGC-UCCgCGaCCGCGCCUGCga-CGag -5'
23622 3' -62.5 NC_005261.1 + 82874 0.71 0.297537
Target:  5'- gGCGAcGGCGCUGGCGgUGGccuCGCcGCg- -3'
miRNA:   3'- -CGCU-CCGCGACCGC-GCCu--GCGaCGag -5'
23622 3' -62.5 NC_005261.1 + 107257 0.71 0.297537
Target:  5'- cGCGGGcGCGCgGGCacggGCGGGCGC-GCaUCa -3'
miRNA:   3'- -CGCUC-CGCGaCCG----CGCCUGCGaCG-AG- -5'
23622 3' -62.5 NC_005261.1 + 24132 0.71 0.304281
Target:  5'- gGUGGGG-GCUGG-GUGGGCGggGCUCa -3'
miRNA:   3'- -CGCUCCgCGACCgCGCCUGCgaCGAG- -5'
23622 3' -62.5 NC_005261.1 + 37167 0.71 0.311142
Target:  5'- cGCGc-GCGCUuGCGCcuGGGCGCUGCUg -3'
miRNA:   3'- -CGCucCGCGAcCGCG--CCUGCGACGAg -5'
23622 3' -62.5 NC_005261.1 + 29914 0.71 0.311142
Target:  5'- cGCGAGcG-GCUGcGCgagcugGCGGACGCUGCg- -3'
miRNA:   3'- -CGCUC-CgCGAC-CG------CGCCUGCGACGag -5'
23622 3' -62.5 NC_005261.1 + 37319 0.71 0.313223
Target:  5'- aCGAGGacgcgguccuggaGCUGGCaggcaucuuuauccGCGGGCGgUGCUCg -3'
miRNA:   3'- cGCUCCg------------CGACCG--------------CGCCUGCgACGAG- -5'
23622 3' -62.5 NC_005261.1 + 127756 0.71 0.31812
Target:  5'- aGCGGGcCGCggcgGGCGCGaaGACGCccggcUGCUCg -3'
miRNA:   3'- -CGCUCcGCGa---CCGCGC--CUGCG-----ACGAG- -5'
23622 3' -62.5 NC_005261.1 + 63598 0.71 0.31812
Target:  5'- cGCGGGGCcCugUGGC-CGGAUGCgGCUCc -3'
miRNA:   3'- -CGCUCCGcG--ACCGcGCCUGCGaCGAG- -5'
23622 3' -62.5 NC_005261.1 + 49569 0.71 0.320944
Target:  5'- aGCauGGGCGUgaacacgggcucggGGCGCGcGGCGCUGCUg -3'
miRNA:   3'- -CGc-UCCGCGa-------------CCGCGC-CUGCGACGAg -5'
23622 3' -62.5 NC_005261.1 + 49469 0.71 0.325215
Target:  5'- gGCGGGcGCGCaGGCcgcGCGGAaGCUGCa- -3'
miRNA:   3'- -CGCUC-CGCGaCCG---CGCCUgCGACGag -5'
23622 3' -62.5 NC_005261.1 + 74859 0.71 0.325215
Target:  5'- cGCGccGGGCGgaGGagGCGGACGCgGCg- -3'
miRNA:   3'- -CGC--UCCGCgaCCg-CGCCUGCGaCGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.