miRNA display CGI


Results 21 - 40 of 225 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23622 3' -62.5 NC_005261.1 + 16551 0.66 0.586424
Target:  5'- cGUGAGGUaCgucaGGCGCaGGACcUUGCUCu -3'
miRNA:   3'- -CGCUCCGcGa---CCGCG-CCUGcGACGAG- -5'
23622 3' -62.5 NC_005261.1 + 103915 0.66 0.586424
Target:  5'- cGCGccgccaggucGGGCGC-GGCGUcugccaGACGCUGCa- -3'
miRNA:   3'- -CGC----------UCCGCGaCCGCGc-----CUGCGACGag -5'
23622 3' -62.5 NC_005261.1 + 111983 0.66 0.586424
Target:  5'- gGCGGGGCGCUggaguccaugGGCcaguucuucguGCGGAuCGCcGCa- -3'
miRNA:   3'- -CGCUCCGCGA----------CCG-----------CGCCU-GCGaCGag -5'
23622 3' -62.5 NC_005261.1 + 137061 0.66 0.585441
Target:  5'- gGC-AGGCGCggaGGCGCGGGCacccaugGCgGCg- -3'
miRNA:   3'- -CGcUCCGCGa--CCGCGCCUG-------CGaCGag -5'
23622 3' -62.5 NC_005261.1 + 23481 0.66 0.577581
Target:  5'- gGCGAGuGCGCgggcccgccugggcaGGCGCGGGCcCUGg-- -3'
miRNA:   3'- -CGCUC-CGCGa--------------CCGCGCCUGcGACgag -5'
23622 3' -62.5 NC_005261.1 + 29338 0.66 0.5766
Target:  5'- cGCGu-GCGCUucggcGGCGCGGGCGacaCUCg -3'
miRNA:   3'- -CGCucCGCGA-----CCGCGCCUGCgacGAG- -5'
23622 3' -62.5 NC_005261.1 + 30797 0.66 0.5766
Target:  5'- -gGAGGUGCUGGgGCcGGA-GgaGCUg -3'
miRNA:   3'- cgCUCCGCGACCgCG-CCUgCgaCGAg -5'
23622 3' -62.5 NC_005261.1 + 29654 0.66 0.570723
Target:  5'- uCGGGGaCGCcaUGGCcgcgcagaacgcgcuGUGGGCGCUGC-Cg -3'
miRNA:   3'- cGCUCC-GCG--ACCG---------------CGCCUGCGACGaG- -5'
23622 3' -62.5 NC_005261.1 + 64482 0.66 0.570723
Target:  5'- cGCcGGGUGCagcgggUGGCGCGGGUGCUcggggcccgcgggcgGCUCc -3'
miRNA:   3'- -CGcUCCGCG------ACCGCGCCUGCGA---------------CGAG- -5'
23622 3' -62.5 NC_005261.1 + 61222 0.66 0.566813
Target:  5'- uGCGAucGCGCUcGGCGUucGGCGCgaGCUCg -3'
miRNA:   3'- -CGCUc-CGCGA-CCGCGc-CUGCGa-CGAG- -5'
23622 3' -62.5 NC_005261.1 + 110529 0.66 0.566813
Target:  5'- uGCGGGGCGCaGGa--GGGCGC-GCg- -3'
miRNA:   3'- -CGCUCCGCGaCCgcgCCUGCGaCGag -5'
23622 3' -62.5 NC_005261.1 + 112347 0.66 0.566813
Target:  5'- aGCGGGGCaucaugGGCGCGcuGAaGCUGCUg -3'
miRNA:   3'- -CGCUCCGcga---CCGCGC--CUgCGACGAg -5'
23622 3' -62.5 NC_005261.1 + 17168 0.66 0.566813
Target:  5'- cCGcGGCGCgGGCGUGGGCagccCUGC-Cg -3'
miRNA:   3'- cGCuCCGCGaCCGCGCCUGc---GACGaG- -5'
23622 3' -62.5 NC_005261.1 + 33745 0.66 0.566813
Target:  5'- cGCGcGGCGCcggGGC-CGGGC-CcGCUCg -3'
miRNA:   3'- -CGCuCCGCGa--CCGcGCCUGcGaCGAG- -5'
23622 3' -62.5 NC_005261.1 + 37226 0.66 0.566813
Target:  5'- cGCGGGcuuGCGC-GGCGCGG-CGCgUGgaCa -3'
miRNA:   3'- -CGCUC---CGCGaCCGCGCCuGCG-ACgaG- -5'
23622 3' -62.5 NC_005261.1 + 40252 0.66 0.566813
Target:  5'- cGUGA-GCGCcaUGGCgGCGGcCGCggcgggGCUCa -3'
miRNA:   3'- -CGCUcCGCG--ACCG-CGCCuGCGa-----CGAG- -5'
23622 3' -62.5 NC_005261.1 + 51764 0.66 0.566813
Target:  5'- cGUGAagcuGGCGCUGGC-CGGcguCGCccUGCUg -3'
miRNA:   3'- -CGCU----CCGCGACCGcGCCu--GCG--ACGAg -5'
23622 3' -62.5 NC_005261.1 + 67668 0.66 0.566813
Target:  5'- cGCGcGGCGCcaGGCGCGGugaGC-GCgUCa -3'
miRNA:   3'- -CGCuCCGCGa-CCGCGCCug-CGaCG-AG- -5'
23622 3' -62.5 NC_005261.1 + 127670 0.66 0.566813
Target:  5'- nCGGGGCGggacGGCgGCGGcCGCUGCc- -3'
miRNA:   3'- cGCUCCGCga--CCG-CGCCuGCGACGag -5'
23622 3' -62.5 NC_005261.1 + 29299 0.66 0.566813
Target:  5'- gGCGAGGC-CUGGCcCGGcagcGCGCcGC-Cg -3'
miRNA:   3'- -CGCUCCGcGACCGcGCC----UGCGaCGaG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.