miRNA display CGI


Results 41 - 60 of 225 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23622 3' -62.5 NC_005261.1 + 32548 0.66 0.566813
Target:  5'- cCGcGGCGCgggccGGCGCGcGugGaagUGCUCu -3'
miRNA:   3'- cGCuCCGCGa----CCGCGC-CugCg--ACGAG- -5'
23622 3' -62.5 NC_005261.1 + 2386 0.66 0.557069
Target:  5'- aGCGGcGCGCUGGCGgCGaGCGCgcccGCg- -3'
miRNA:   3'- -CGCUcCGCGACCGC-GCcUGCGa---CGag -5'
23622 3' -62.5 NC_005261.1 + 84134 0.66 0.557069
Target:  5'- gGCGGGGuCGCUGGCGggccuCGGccACGCcccUGC-Ca -3'
miRNA:   3'- -CGCUCC-GCGACCGC-----GCC--UGCG---ACGaG- -5'
23622 3' -62.5 NC_005261.1 + 29866 0.66 0.557069
Target:  5'- cGCGcGGCGCcGGCGC---CGCUGC-Cg -3'
miRNA:   3'- -CGCuCCGCGaCCGCGccuGCGACGaG- -5'
23622 3' -62.5 NC_005261.1 + 118814 0.66 0.557069
Target:  5'- gGCGucuGCGCccugGGCGCGGcACuGCcGCUCu -3'
miRNA:   3'- -CGCuc-CGCGa---CCGCGCC-UG-CGaCGAG- -5'
23622 3' -62.5 NC_005261.1 + 135642 0.66 0.557069
Target:  5'- uGCGcugcuaccuGCGCgGGCGCGGGCGgccCUcGCUCg -3'
miRNA:   3'- -CGCuc-------CGCGaCCGCGCCUGC---GA-CGAG- -5'
23622 3' -62.5 NC_005261.1 + 32143 0.67 0.547373
Target:  5'- cGCuGGGgGCUcGGCGCGc-CGCUGCg- -3'
miRNA:   3'- -CGcUCCgCGA-CCGCGCcuGCGACGag -5'
23622 3' -62.5 NC_005261.1 + 89890 0.67 0.547373
Target:  5'- ---cGGCGCUGGuCG-GGAaGCUGUUCu -3'
miRNA:   3'- cgcuCCGCGACC-GCgCCUgCGACGAG- -5'
23622 3' -62.5 NC_005261.1 + 29197 0.67 0.547373
Target:  5'- cCGcGGCGCccGCGCGGGCGC-GCg- -3'
miRNA:   3'- cGCuCCGCGacCGCGCCUGCGaCGag -5'
23622 3' -62.5 NC_005261.1 + 23566 0.67 0.544475
Target:  5'- gGUGGGGCaggGCUGGCcguggcucauggcgGCGGugGUggugGCUg -3'
miRNA:   3'- -CGCUCCG---CGACCG--------------CGCCugCGa---CGAg -5'
23622 3' -62.5 NC_005261.1 + 46280 0.67 0.540618
Target:  5'- cCGGGGCGCUcuggccgggcaacGGCGCGccgcaguagccccgcGAgGCUGCg- -3'
miRNA:   3'- cGCUCCGCGA-------------CCGCGC---------------CUgCGACGag -5'
23622 3' -62.5 NC_005261.1 + 42193 0.67 0.537732
Target:  5'- cGCGAgccgcuccacGGCGCc-GCGCGGGCGCcccgccgcgaGCUCc -3'
miRNA:   3'- -CGCU----------CCGCGacCGCGCCUGCGa---------CGAG- -5'
23622 3' -62.5 NC_005261.1 + 110441 0.67 0.537732
Target:  5'- cGCGuucccgcaccGGGCGUuugGGUGCcuGGGCggGCUGCUCu -3'
miRNA:   3'- -CGC----------UCCGCGa--CCGCG--CCUG--CGACGAG- -5'
23622 3' -62.5 NC_005261.1 + 76063 0.67 0.537732
Target:  5'- gGCG-GGCGCcaccaGG-GCGGGCuGCUGCg- -3'
miRNA:   3'- -CGCuCCGCGa----CCgCGCCUG-CGACGag -5'
23622 3' -62.5 NC_005261.1 + 76756 0.67 0.531975
Target:  5'- aCGuGGCGCaccccgcguucuucGGCGCGGACGCccccgcGCUg -3'
miRNA:   3'- cGCuCCGCGa-------------CCGCGCCUGCGa-----CGAg -5'
23622 3' -62.5 NC_005261.1 + 88724 0.67 0.531017
Target:  5'- uGCGGGGUgcgcgaugagggccaGCUGGUggacgccauggugGCGG-CGCUGCg- -3'
miRNA:   3'- -CGCUCCG---------------CGACCG-------------CGCCuGCGACGag -5'
23622 3' -62.5 NC_005261.1 + 118910 0.67 0.528149
Target:  5'- uGCGucuggguccGGCGCcgcgGGCGCGGcgccGCGCgGCUg -3'
miRNA:   3'- -CGCu--------CCGCGa---CCGCGCC----UGCGaCGAg -5'
23622 3' -62.5 NC_005261.1 + 85942 0.67 0.528149
Target:  5'- gGCGgccaGGGCGCcgcggaagcUGGCGUGGuccgugauuGCGC-GCUCg -3'
miRNA:   3'- -CGC----UCCGCG---------ACCGCGCC---------UGCGaCGAG- -5'
23622 3' -62.5 NC_005261.1 + 112586 0.67 0.528149
Target:  5'- uGCGAGG-GCgucGUGUGGACGCUcUUCg -3'
miRNA:   3'- -CGCUCCgCGac-CGCGCCUGCGAcGAG- -5'
23622 3' -62.5 NC_005261.1 + 38187 0.67 0.528149
Target:  5'- -gGAGGC-CUGGgcgcgcCGCGGcguGCuGCUGCUCa -3'
miRNA:   3'- cgCUCCGcGACC------GCGCC---UG-CGACGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.