miRNA display CGI


Results 61 - 80 of 225 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23622 3' -62.5 NC_005261.1 + 96959 0.67 0.525287
Target:  5'- gGCGGGGCaGCcgccgGGCGCGauucacgcggccucGGCGCgGCUa -3'
miRNA:   3'- -CGCUCCG-CGa----CCGCGC--------------CUGCGaCGAg -5'
23622 3' -62.5 NC_005261.1 + 117188 0.67 0.525287
Target:  5'- gGCGGGGCGgUgacguucuccuaccGGCGCGccCGCUGCc- -3'
miRNA:   3'- -CGCUCCGCgA--------------CCGCGCcuGCGACGag -5'
23622 3' -62.5 NC_005261.1 + 31430 0.67 0.52243
Target:  5'- gGgGAGGCGCUGGCGgcgccgcccggcgaGGACGa-GCg- -3'
miRNA:   3'- -CgCUCCGCGACCGCg-------------CCUGCgaCGag -5'
23622 3' -62.5 NC_005261.1 + 29547 0.67 0.518631
Target:  5'- cGCG-GGCccggaccugcaGCUGGCGCGccUGCUGCa- -3'
miRNA:   3'- -CGCuCCG-----------CGACCGCGCcuGCGACGag -5'
23622 3' -62.5 NC_005261.1 + 53455 0.67 0.518631
Target:  5'- cGgGAGGuCGCcgGGCG-GGACGCaGCa- -3'
miRNA:   3'- -CgCUCC-GCGa-CCGCgCCUGCGaCGag -5'
23622 3' -62.5 NC_005261.1 + 62294 0.67 0.518631
Target:  5'- aCGucGGCGCc-GCGCGGGCGCgcgGCg- -3'
miRNA:   3'- cGCu-CCGCGacCGCGCCUGCGa--CGag -5'
23622 3' -62.5 NC_005261.1 + 73674 0.67 0.509181
Target:  5'- cGCgGAGG-GCgGGCGCGGGCuuagacgGCUCg -3'
miRNA:   3'- -CG-CUCCgCGaCCGCGCCUGcga----CGAG- -5'
23622 3' -62.5 NC_005261.1 + 69300 0.67 0.509181
Target:  5'- cGCGGGGCGCcggUGGCGgCGGGaGCggggGUg- -3'
miRNA:   3'- -CGCUCCGCG---ACCGC-GCCUgCGa---CGag -5'
23622 3' -62.5 NC_005261.1 + 14148 0.67 0.499805
Target:  5'- cGCGAGGaCGCUccagccgcgaacGGCGCgcgucucgGGGCGCgGgUCa -3'
miRNA:   3'- -CGCUCC-GCGA------------CCGCG--------CCUGCGaCgAG- -5'
23622 3' -62.5 NC_005261.1 + 43634 0.67 0.499805
Target:  5'- uGUG-GGCGCccgugUGGCGCGGcggugACG-UGCUCu -3'
miRNA:   3'- -CGCuCCGCG-----ACCGCGCC-----UGCgACGAG- -5'
23622 3' -62.5 NC_005261.1 + 4503 0.67 0.499805
Target:  5'- cGCGGGccccagucGCGCgcccGCGCGGGCGCcGCg- -3'
miRNA:   3'- -CGCUC--------CGCGac--CGCGCCUGCGaCGag -5'
23622 3' -62.5 NC_005261.1 + 83404 0.67 0.499805
Target:  5'- cCGAGGCGagcaGGUGCGcGAaguugaGCUGCUUc -3'
miRNA:   3'- cGCUCCGCga--CCGCGC-CUg-----CGACGAG- -5'
23622 3' -62.5 NC_005261.1 + 32228 0.67 0.498871
Target:  5'- cCGcGGCGgUGGCcuucugcGCGGccGCGCUGCUg -3'
miRNA:   3'- cGCuCCGCgACCG-------CGCC--UGCGACGAg -5'
23622 3' -62.5 NC_005261.1 + 43696 0.68 0.494216
Target:  5'- gGCGAGguccuggccugccacGCGCUGcgcgagcacGCGCGGcucugccaGCUGCUCa -3'
miRNA:   3'- -CGCUC---------------CGCGAC---------CGCGCCug------CGACGAG- -5'
23622 3' -62.5 NC_005261.1 + 21775 0.68 0.490506
Target:  5'- gGCGAGcCGCcgcGGCGCGGGcCGCcGCa- -3'
miRNA:   3'- -CGCUCcGCGa--CCGCGCCU-GCGaCGag -5'
23622 3' -62.5 NC_005261.1 + 55270 0.68 0.490506
Target:  5'- uGCGcccccuGGCGCgccggaGGCGgGGGCGCUGa-- -3'
miRNA:   3'- -CGCu-----CCGCGa-----CCGCgCCUGCGACgag -5'
23622 3' -62.5 NC_005261.1 + 59472 0.68 0.490506
Target:  5'- cGgGGGGCaGCgccGGCGCGGcCGCcGCg- -3'
miRNA:   3'- -CgCUCCG-CGa--CCGCGCCuGCGaCGag -5'
23622 3' -62.5 NC_005261.1 + 74133 0.68 0.490506
Target:  5'- gGCGccGGUGCUGGUguucgucucccaGCGGggcauGCGCgUGCUCa -3'
miRNA:   3'- -CGCu-CCGCGACCG------------CGCC-----UGCG-ACGAG- -5'
23622 3' -62.5 NC_005261.1 + 82171 0.68 0.490506
Target:  5'- aGCGcGGCGCggaaGGCGCGG-CG-UGCg- -3'
miRNA:   3'- -CGCuCCGCGa---CCGCGCCuGCgACGag -5'
23622 3' -62.5 NC_005261.1 + 28253 0.68 0.490506
Target:  5'- aGCGGGG-GCUGcucGgGgGGGCGCUGUUg -3'
miRNA:   3'- -CGCUCCgCGAC---CgCgCCUGCGACGAg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.