miRNA display CGI


Results 1 - 20 of 225 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23622 3' -62.5 NC_005261.1 + 91 0.66 0.586424
Target:  5'- uGCGGGGCGCgcccccgGGCcccgccgcccGCGccGGCGCcgccccuggUGCUCg -3'
miRNA:   3'- -CGCUCCGCGa------CCG----------CGC--CUGCG---------ACGAG- -5'
23622 3' -62.5 NC_005261.1 + 144 0.66 0.604182
Target:  5'- cGCGGGGCuggcaggGCUGGCggaguugGCGGggcugGCGCcccuggUGCUCc -3'
miRNA:   3'- -CGCUCCG-------CGACCG-------CGCC-----UGCG------ACGAG- -5'
23622 3' -62.5 NC_005261.1 + 360 0.69 0.402519
Target:  5'- cGCGGcccggcGGCGgUGGCgGCGGugGCgGCg- -3'
miRNA:   3'- -CGCU------CCGCgACCG-CGCCugCGaCGag -5'
23622 3' -62.5 NC_005261.1 + 534 0.73 0.230919
Target:  5'- gGCGGGGgGCaGG-GCGGACGgCgGCUCg -3'
miRNA:   3'- -CGCUCCgCGaCCgCGCCUGC-GaCGAG- -5'
23622 3' -62.5 NC_005261.1 + 1067 0.7 0.362438
Target:  5'- cGCGGGGgGCUGGCcccGCuccaGGGCGagcccgGCUCg -3'
miRNA:   3'- -CGCUCCgCGACCG---CG----CCUGCga----CGAG- -5'
23622 3' -62.5 NC_005261.1 + 1199 0.66 0.59628
Target:  5'- gGCcGGGCGC-GGCGCGGAcccccCGCcgaUGC-Cg -3'
miRNA:   3'- -CGcUCCGCGaCCGCGCCU-----GCG---ACGaG- -5'
23622 3' -62.5 NC_005261.1 + 1295 0.68 0.453267
Target:  5'- gGCGGGGCucccgucGCcGGCgGCGGcACGC-GCUCc -3'
miRNA:   3'- -CGCUCCG-------CGaCCG-CGCC-UGCGaCGAG- -5'
23622 3' -62.5 NC_005261.1 + 1877 0.69 0.427017
Target:  5'- cGCGAGGCcaGCacGGCGCGcGccagcgcGCGCcGCUCa -3'
miRNA:   3'- -CGCUCCG--CGa-CCGCGC-C-------UGCGaCGAG- -5'
23622 3' -62.5 NC_005261.1 + 2386 0.66 0.557069
Target:  5'- aGCGGcGCGCUGGCGgCGaGCGCgcccGCg- -3'
miRNA:   3'- -CGCUcCGCGACCGC-GCcUGCGa---CGag -5'
23622 3' -62.5 NC_005261.1 + 2548 0.73 0.230919
Target:  5'- aGCGccgcGGCGCUgGGCGCGGGCGUgugGUa- -3'
miRNA:   3'- -CGCu---CCGCGA-CCGCGCCUGCGa--CGag -5'
23622 3' -62.5 NC_005261.1 + 3547 0.68 0.472154
Target:  5'- cGCGcaGCGCggcgGGCGCGG-CGCcGCUa -3'
miRNA:   3'- -CGCucCGCGa---CCGCGCCuGCGaCGAg -5'
23622 3' -62.5 NC_005261.1 + 3830 0.69 0.427877
Target:  5'- cGCGggcccGGGCGCUGGCggcaGCGG-CGCcgGCg- -3'
miRNA:   3'- -CGC-----UCCGCGACCG----CGCCuGCGa-CGag -5'
23622 3' -62.5 NC_005261.1 + 3896 0.73 0.236416
Target:  5'- gGCGA-GCGC-GGCGCGGGCGCccGCg- -3'
miRNA:   3'- -CGCUcCGCGaCCGCGCCUGCGa-CGag -5'
23622 3' -62.5 NC_005261.1 + 4503 0.67 0.499805
Target:  5'- cGCGGGccccagucGCGCgcccGCGCGGGCGCcGCg- -3'
miRNA:   3'- -CGCUC--------CGCGac--CGCGCCUGCGaCGag -5'
23622 3' -62.5 NC_005261.1 + 10423 0.66 0.60616
Target:  5'- aCG-GGUGCUGuGCccaCGGACGCgUGCUg -3'
miRNA:   3'- cGCuCCGCGAC-CGc--GCCUGCG-ACGAg -5'
23622 3' -62.5 NC_005261.1 + 11476 0.69 0.386151
Target:  5'- cGCgGAGGgGCggGGCGgGGGUGCcgGCUCg -3'
miRNA:   3'- -CG-CUCCgCGa-CCGCgCCUGCGa-CGAG- -5'
23622 3' -62.5 NC_005261.1 + 11831 0.69 0.419319
Target:  5'- -gGGGGCGggGGCcccGCGGGCGCgcGUUCg -3'
miRNA:   3'- cgCUCCGCgaCCG---CGCCUGCGa-CGAG- -5'
23622 3' -62.5 NC_005261.1 + 12090 0.71 0.332427
Target:  5'- cCGGGGCgGCUcaaaGGCGCGG-CGCcaGCUCu -3'
miRNA:   3'- cGCUCCG-CGA----CCGCGCCuGCGa-CGAG- -5'
23622 3' -62.5 NC_005261.1 + 12325 0.68 0.445299
Target:  5'- gGCGGGcGCGCgcuuggccGGCGCGGcCGCcGC-Cg -3'
miRNA:   3'- -CGCUC-CGCGa-------CCGCGCCuGCGaCGaG- -5'
23622 3' -62.5 NC_005261.1 + 12758 0.77 0.13174
Target:  5'- gGCGAGGuCGUaGGCgGCGGugGCgggggGCUCg -3'
miRNA:   3'- -CGCUCC-GCGaCCG-CGCCugCGa----CGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.