miRNA display CGI


Results 21 - 40 of 225 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23622 3' -62.5 NC_005261.1 + 13291 0.7 0.370229
Target:  5'- gGCGGGGCGCaGGUGUGcGACGgggGcCUCg -3'
miRNA:   3'- -CGCUCCGCGaCCGCGC-CUGCga-C-GAG- -5'
23622 3' -62.5 NC_005261.1 + 13681 0.75 0.173049
Target:  5'- cGCGGGGCGCgcgGGCGUGGgGCGggGCg- -3'
miRNA:   3'- -CGCUCCGCGa--CCGCGCC-UGCgaCGag -5'
23622 3' -62.5 NC_005261.1 + 14148 0.67 0.499805
Target:  5'- cGCGAGGaCGCUccagccgcgaacGGCGCgcgucucgGGGCGCgGgUCa -3'
miRNA:   3'- -CGCUCC-GCGA------------CCGCG--------CCUGCGaCgAG- -5'
23622 3' -62.5 NC_005261.1 + 14365 0.68 0.46311
Target:  5'- cGCGGccGGgGC-GGCGCGGugGCccGCaUCg -3'
miRNA:   3'- -CGCU--CCgCGaCCGCGCCugCGa-CG-AG- -5'
23622 3' -62.5 NC_005261.1 + 14452 0.69 0.427877
Target:  5'- cGCGGGGCGC--GCgGCGGagcucGCGCUGgUCc -3'
miRNA:   3'- -CGCUCCGCGacCG-CGCC-----UGCGACgAG- -5'
23622 3' -62.5 NC_005261.1 + 14528 0.68 0.472154
Target:  5'- aGCccGGCGgUGGCGCGGcCGCccgGCg- -3'
miRNA:   3'- -CGcuCCGCgACCGCGCCuGCGa--CGag -5'
23622 3' -62.5 NC_005261.1 + 14944 0.66 0.60616
Target:  5'- aGCu-GGCGCUGGaagcgaGCGGGCGUgccugggGCg- -3'
miRNA:   3'- -CGcuCCGCGACCg-----CGCCUGCGa------CGag -5'
23622 3' -62.5 NC_005261.1 + 16551 0.66 0.586424
Target:  5'- cGUGAGGUaCgucaGGCGCaGGACcUUGCUCu -3'
miRNA:   3'- -CGCUCCGcGa---CCGCG-CCUGcGACGAG- -5'
23622 3' -62.5 NC_005261.1 + 17168 0.66 0.566813
Target:  5'- cCGcGGCGCgGGCGUGGGCagccCUGC-Cg -3'
miRNA:   3'- cGCuCCGCGaCCGCGCCUGc---GACGaG- -5'
23622 3' -62.5 NC_005261.1 + 17748 0.66 0.59628
Target:  5'- aGCG-GGCGgacuuCUGGgGCGGugGUgGCgUCa -3'
miRNA:   3'- -CGCuCCGC-----GACCgCGCCugCGaCG-AG- -5'
23622 3' -62.5 NC_005261.1 + 21192 0.72 0.284398
Target:  5'- cGCGA-GCGC-GGcCGCGGACGCUGg-- -3'
miRNA:   3'- -CGCUcCGCGaCC-GCGCCUGCGACgag -5'
23622 3' -62.5 NC_005261.1 + 21627 0.76 0.142007
Target:  5'- gGCGAGGgucccCGCcccGGCGCGGACGCcGCUg -3'
miRNA:   3'- -CGCUCC-----GCGa--CCGCGCCUGCGaCGAg -5'
23622 3' -62.5 NC_005261.1 + 21775 0.68 0.490506
Target:  5'- gGCGAGcCGCcgcGGCGCGGGcCGCcGCa- -3'
miRNA:   3'- -CGCUCcGCGa--CCGCGCCU-GCGaCGag -5'
23622 3' -62.5 NC_005261.1 + 21824 0.7 0.347201
Target:  5'- cGCGgcGGGCGC-GcGUGCGGGCGg-GCUCg -3'
miRNA:   3'- -CGC--UCCGCGaC-CGCGCCUGCgaCGAG- -5'
23622 3' -62.5 NC_005261.1 + 23422 0.77 0.135084
Target:  5'- gGCGAGGCGCUGcGCGUcgGGGCGCcagucCUCa -3'
miRNA:   3'- -CGCUCCGCGAC-CGCG--CCUGCGac---GAG- -5'
23622 3' -62.5 NC_005261.1 + 23481 0.66 0.577581
Target:  5'- gGCGAGuGCGCgggcccgccugggcaGGCGCGGGCcCUGg-- -3'
miRNA:   3'- -CGCUC-CGCGa--------------CCGCGCCUGcGACgag -5'
23622 3' -62.5 NC_005261.1 + 23566 0.67 0.544475
Target:  5'- gGUGGGGCaggGCUGGCcguggcucauggcgGCGGugGUggugGCUg -3'
miRNA:   3'- -CGCUCCG---CGACCG--------------CGCCugCGa---CGAg -5'
23622 3' -62.5 NC_005261.1 + 24132 0.71 0.304281
Target:  5'- gGUGGGG-GCUGG-GUGGGCGggGCUCa -3'
miRNA:   3'- -CGCUCCgCGACCgCGCCUGCgaCGAG- -5'
23622 3' -62.5 NC_005261.1 + 28253 0.68 0.490506
Target:  5'- aGCGGGG-GCUGcucGgGgGGGCGCUGUUg -3'
miRNA:   3'- -CGCUCCgCGAC---CgCgCCUGCGACGAg -5'
23622 3' -62.5 NC_005261.1 + 28769 0.74 0.200172
Target:  5'- -gGGGGCGCcugggccgcGGCGCGGGCGCUcGCg- -3'
miRNA:   3'- cgCUCCGCGa--------CCGCGCCUGCGA-CGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.