miRNA display CGI


Results 41 - 60 of 225 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23622 3' -62.5 NC_005261.1 + 28872 0.74 0.190743
Target:  5'- uUGAGGCuGC-GGCGCGGACGCcGC-Cg -3'
miRNA:   3'- cGCUCCG-CGaCCGCGCCUGCGaCGaG- -5'
23622 3' -62.5 NC_005261.1 + 29197 0.67 0.547373
Target:  5'- cCGcGGCGCccGCGCGGGCGC-GCg- -3'
miRNA:   3'- cGCuCCGCGacCGCGCCUGCGaCGag -5'
23622 3' -62.5 NC_005261.1 + 29299 0.66 0.566813
Target:  5'- gGCGAGGC-CUGGCcCGGcagcGCGCcGC-Cg -3'
miRNA:   3'- -CGCUCCGcGACCGcGCC----UGCGaCGaG- -5'
23622 3' -62.5 NC_005261.1 + 29338 0.66 0.5766
Target:  5'- cGCGu-GCGCUucggcGGCGCGGGCGacaCUCg -3'
miRNA:   3'- -CGCucCGCGA-----CCGCGCCUGCgacGAG- -5'
23622 3' -62.5 NC_005261.1 + 29547 0.67 0.518631
Target:  5'- cGCG-GGCccggaccugcaGCUGGCGCGccUGCUGCa- -3'
miRNA:   3'- -CGCuCCG-----------CGACCGCGCcuGCGACGag -5'
23622 3' -62.5 NC_005261.1 + 29654 0.66 0.570723
Target:  5'- uCGGGGaCGCcaUGGCcgcgcagaacgcgcuGUGGGCGCUGC-Cg -3'
miRNA:   3'- cGCUCC-GCG--ACCG---------------CGCCUGCGACGaG- -5'
23622 3' -62.5 NC_005261.1 + 29805 0.7 0.362438
Target:  5'- ---cGGCGCcggcGGCGCGGGCGCccgcgccgcGCUCg -3'
miRNA:   3'- cgcuCCGCGa---CCGCGCCUGCGa--------CGAG- -5'
23622 3' -62.5 NC_005261.1 + 29866 0.66 0.557069
Target:  5'- cGCGcGGCGCcGGCGC---CGCUGC-Cg -3'
miRNA:   3'- -CGCuCCGCGaCCGCGccuGCGACGaG- -5'
23622 3' -62.5 NC_005261.1 + 29914 0.71 0.311142
Target:  5'- cGCGAGcG-GCUGcGCgagcugGCGGACGCUGCg- -3'
miRNA:   3'- -CGCUC-CgCGAC-CG------CGCCUGCGACGag -5'
23622 3' -62.5 NC_005261.1 + 29958 0.78 0.102275
Target:  5'- cGCGAGGCGCUagaggcGGCGCGGuGCGCcGC-Cg -3'
miRNA:   3'- -CGCUCCGCGA------CCGCGCC-UGCGaCGaG- -5'
23622 3' -62.5 NC_005261.1 + 30229 0.68 0.46311
Target:  5'- cGCGAaccguGGCcccGCUGGCGCGGuacucgacGCGCgGCg- -3'
miRNA:   3'- -CGCU-----CCG---CGACCGCGCC--------UGCGaCGag -5'
23622 3' -62.5 NC_005261.1 + 30797 0.66 0.5766
Target:  5'- -gGAGGUGCUGGgGCcGGA-GgaGCUg -3'
miRNA:   3'- cgCUCCGCGACCgCG-CCUgCgaCGAg -5'
23622 3' -62.5 NC_005261.1 + 31206 0.68 0.490506
Target:  5'- cCGAGGuCGC-GGCGCGGcuCGCggaccacccGCUCu -3'
miRNA:   3'- cGCUCC-GCGaCCGCGCCu-GCGa--------CGAG- -5'
23622 3' -62.5 NC_005261.1 + 31278 0.7 0.378134
Target:  5'- cCGAGGCGCUGGC-CGaGAuCGCgGCcCg -3'
miRNA:   3'- cGCUCCGCGACCGcGC-CU-GCGaCGaG- -5'
23622 3' -62.5 NC_005261.1 + 31306 0.68 0.454157
Target:  5'- cCGccGCGCggGGCccGCGGGCGC-GCUCg -3'
miRNA:   3'- cGCucCGCGa-CCG--CGCCUGCGaCGAG- -5'
23622 3' -62.5 NC_005261.1 + 31430 0.67 0.52243
Target:  5'- gGgGAGGCGCUGGCGgcgccgcccggcgaGGACGa-GCg- -3'
miRNA:   3'- -CgCUCCGCGACCGCg-------------CCUGCgaCGag -5'
23622 3' -62.5 NC_005261.1 + 31591 0.76 0.156835
Target:  5'- cGUGAGcGCGCUcGGCGCgcaGGGCgugcuGCUGCUCg -3'
miRNA:   3'- -CGCUC-CGCGA-CCGCG---CCUG-----CGACGAG- -5'
23622 3' -62.5 NC_005261.1 + 31824 0.68 0.46311
Target:  5'- aGCGGcGcGCGCUGGCGCGcGCcguGCUGgcCUCg -3'
miRNA:   3'- -CGCU-C-CGCGACCGCGCcUG---CGAC--GAG- -5'
23622 3' -62.5 NC_005261.1 + 32143 0.67 0.547373
Target:  5'- cGCuGGGgGCUcGGCGCGc-CGCUGCg- -3'
miRNA:   3'- -CGcUCCgCGA-CCGCGCcuGCGACGag -5'
23622 3' -62.5 NC_005261.1 + 32228 0.67 0.498871
Target:  5'- cCGcGGCGgUGGCcuucugcGCGGccGCGCUGCUg -3'
miRNA:   3'- cGCuCCGCgACCG-------CGCC--UGCGACGAg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.