miRNA display CGI


Results 21 - 40 of 225 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23622 3' -62.5 NC_005261.1 + 132557 0.66 0.60616
Target:  5'- gGCGAGGCGCaguacGGCuGCGaaGACGUcgGCg- -3'
miRNA:   3'- -CGCUCCGCGa----CCG-CGC--CUGCGa-CGag -5'
23622 3' -62.5 NC_005261.1 + 130637 0.73 0.225531
Target:  5'- cGCGGGGCGCgcguGCGCucgccgacGCGCUGCUCc -3'
miRNA:   3'- -CGCUCCGCGac--CGCGcc------UGCGACGAG- -5'
23622 3' -62.5 NC_005261.1 + 130515 0.72 0.290909
Target:  5'- gGCGcAGGCGCUGGC-CGaaGCGCgcccGCUCg -3'
miRNA:   3'- -CGC-UCCGCGACCGcGCc-UGCGa---CGAG- -5'
23622 3' -62.5 NC_005261.1 + 129200 0.69 0.419319
Target:  5'- cGCGuGGCGCagcugcuucugcUGGUGCGG-CGCcucaagugGCUCc -3'
miRNA:   3'- -CGCuCCGCG------------ACCGCGCCuGCGa-------CGAG- -5'
23622 3' -62.5 NC_005261.1 + 127797 0.69 0.427877
Target:  5'- gGCGGgccGGCGCcgcGGCgGCGGGcCGCUcgcGCUCg -3'
miRNA:   3'- -CGCU---CCGCGa--CCG-CGCCU-GCGA---CGAG- -5'
23622 3' -62.5 NC_005261.1 + 127756 0.71 0.31812
Target:  5'- aGCGGGcCGCggcgGGCGCGaaGACGCccggcUGCUCg -3'
miRNA:   3'- -CGCUCcGCGa---CCGCGC--CUGCG-----ACGAG- -5'
23622 3' -62.5 NC_005261.1 + 127670 0.66 0.566813
Target:  5'- nCGGGGCGggacGGCgGCGGcCGCUGCc- -3'
miRNA:   3'- cGCUCCGCga--CCG-CGCCuGCGACGag -5'
23622 3' -62.5 NC_005261.1 + 127637 0.68 0.46311
Target:  5'- cGCGAcGGCgGC-GGCGCcgggGGGCGCgcggGUUCg -3'
miRNA:   3'- -CGCU-CCG-CGaCCGCG----CCUGCGa---CGAG- -5'
23622 3' -62.5 NC_005261.1 + 127349 0.69 0.419319
Target:  5'- gGCGGGGCGCUGG-GCccGCGUgGCUa -3'
miRNA:   3'- -CGCUCCGCGACCgCGccUGCGaCGAg -5'
23622 3' -62.5 NC_005261.1 + 126948 0.75 0.186176
Target:  5'- -aGGGGCGCcgGGCGCGGGgGCgGCa- -3'
miRNA:   3'- cgCUCCGCGa-CCGCGCCUgCGaCGag -5'
23622 3' -62.5 NC_005261.1 + 125298 0.7 0.378134
Target:  5'- cGCG-GGCGCcGGaccCGCGGGCGCUccGCg- -3'
miRNA:   3'- -CGCuCCGCGaCC---GCGCCUGCGA--CGag -5'
23622 3' -62.5 NC_005261.1 + 125097 0.66 0.59628
Target:  5'- uGCGGGGCGCccccuucCG-GGGCGC-GCUCg -3'
miRNA:   3'- -CGCUCCGCGacc----GCgCCUGCGaCGAG- -5'
23622 3' -62.5 NC_005261.1 + 123169 0.78 0.107623
Target:  5'- gGCGGGcGCGCgGGCGUGGugGCUGgUg -3'
miRNA:   3'- -CGCUC-CGCGaCCGCGCCugCGACgAg -5'
23622 3' -62.5 NC_005261.1 + 121111 0.74 0.200172
Target:  5'- uGCGgguccucuaGGGCGCggaGGCGCGGGCGCgaGCg- -3'
miRNA:   3'- -CGC---------UCCGCGa--CCGCGCCUGCGa-CGag -5'
23622 3' -62.5 NC_005261.1 + 121017 0.68 0.436538
Target:  5'- -gGAGGaccCGCUGGCGCGGgagaaGCGCcGC-Ca -3'
miRNA:   3'- cgCUCC---GCGACCGCGCC-----UGCGaCGaG- -5'
23622 3' -62.5 NC_005261.1 + 120931 0.7 0.354762
Target:  5'- cGCGA-GCGCcgGGCGCGGGaagGUggagGCUCg -3'
miRNA:   3'- -CGCUcCGCGa-CCGCGCCUg--CGa---CGAG- -5'
23622 3' -62.5 NC_005261.1 + 120638 0.69 0.410865
Target:  5'- gGCGGcccugugccugcGGCGCaaGGCGCGGGCGC-GCc- -3'
miRNA:   3'- -CGCU------------CCGCGa-CCGCGCCUGCGaCGag -5'
23622 3' -62.5 NC_005261.1 + 118910 0.67 0.528149
Target:  5'- uGCGucuggguccGGCGCcgcgGGCGCGGcgccGCGCgGCUg -3'
miRNA:   3'- -CGCu--------CCGCGa---CCGCGCC----UGCGaCGAg -5'
23622 3' -62.5 NC_005261.1 + 118814 0.66 0.557069
Target:  5'- gGCGucuGCGCccugGGCGCGGcACuGCcGCUCu -3'
miRNA:   3'- -CGCuc-CGCGa---CCGCGCC-UG-CGaCGAG- -5'
23622 3' -62.5 NC_005261.1 + 118683 0.76 0.160755
Target:  5'- gGCG-GGCGCUGGCGCacGCGCggcgugguccUGCUCa -3'
miRNA:   3'- -CGCuCCGCGACCGCGccUGCG----------ACGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.