miRNA display CGI


Results 41 - 60 of 225 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23622 3' -62.5 NC_005261.1 + 97678 0.66 0.60616
Target:  5'- cGCGGGGC-UUGG-GCGGG-GCUGC-Cg -3'
miRNA:   3'- -CGCUCCGcGACCgCGCCUgCGACGaG- -5'
23622 3' -62.5 NC_005261.1 + 10423 0.66 0.60616
Target:  5'- aCG-GGUGCUGuGCccaCGGACGCgUGCUg -3'
miRNA:   3'- cGCuCCGCGAC-CGc--GCCUGCG-ACGAg -5'
23622 3' -62.5 NC_005261.1 + 80299 0.66 0.60616
Target:  5'- uGCGuGGCGUUGaaGCGCucacgguaGACGC-GCUCg -3'
miRNA:   3'- -CGCuCCGCGAC--CGCGc-------CUGCGaCGAG- -5'
23622 3' -62.5 NC_005261.1 + 132557 0.66 0.60616
Target:  5'- gGCGAGGCGCaguacGGCuGCGaaGACGUcgGCg- -3'
miRNA:   3'- -CGCUCCGCGa----CCG-CGC--CUGCGa-CGag -5'
23622 3' -62.5 NC_005261.1 + 133618 0.66 0.60616
Target:  5'- ----cGCGCUGGCGCuguGGGcCGC-GCUCg -3'
miRNA:   3'- cgcucCGCGACCGCG---CCU-GCGaCGAG- -5'
23622 3' -62.5 NC_005261.1 + 1199 0.66 0.59628
Target:  5'- gGCcGGGCGC-GGCGCGGAcccccCGCcgaUGC-Cg -3'
miRNA:   3'- -CGcUCCGCGaCCGCGCCU-----GCG---ACGaG- -5'
23622 3' -62.5 NC_005261.1 + 17748 0.66 0.59628
Target:  5'- aGCG-GGCGgacuuCUGGgGCGGugGUgGCgUCa -3'
miRNA:   3'- -CGCuCCGC-----GACCgCGCCugCGaCG-AG- -5'
23622 3' -62.5 NC_005261.1 + 29654 0.66 0.570723
Target:  5'- uCGGGGaCGCcaUGGCcgcgcagaacgcgcuGUGGGCGCUGC-Cg -3'
miRNA:   3'- cGCUCC-GCG--ACCG---------------CGCCUGCGACGaG- -5'
23622 3' -62.5 NC_005261.1 + 64482 0.66 0.570723
Target:  5'- cGCcGGGUGCagcgggUGGCGCGGGUGCUcggggcccgcgggcgGCUCc -3'
miRNA:   3'- -CGcUCCGCG------ACCGCGCCUGCGA---------------CGAG- -5'
23622 3' -62.5 NC_005261.1 + 30797 0.66 0.5766
Target:  5'- -gGAGGUGCUGGgGCcGGA-GgaGCUg -3'
miRNA:   3'- cgCUCCGCGACCgCG-CCUgCgaCGAg -5'
23622 3' -62.5 NC_005261.1 + 29338 0.66 0.5766
Target:  5'- cGCGu-GCGCUucggcGGCGCGGGCGacaCUCg -3'
miRNA:   3'- -CGCucCGCGA-----CCGCGCCUGCgacGAG- -5'
23622 3' -62.5 NC_005261.1 + 23481 0.66 0.577581
Target:  5'- gGCGAGuGCGCgggcccgccugggcaGGCGCGGGCcCUGg-- -3'
miRNA:   3'- -CGCUC-CGCGa--------------CCGCGCCUGcGACgag -5'
23622 3' -62.5 NC_005261.1 + 137061 0.66 0.585441
Target:  5'- gGC-AGGCGCggaGGCGCGGGCacccaugGCgGCg- -3'
miRNA:   3'- -CGcUCCGCGa--CCGCGCCUG-------CGaCGag -5'
23622 3' -62.5 NC_005261.1 + 91 0.66 0.586424
Target:  5'- uGCGGGGCGCgcccccgGGCcccgccgcccGCGccGGCGCcgccccuggUGCUCg -3'
miRNA:   3'- -CGCUCCGCGa------CCG----------CGC--CUGCG---------ACGAG- -5'
23622 3' -62.5 NC_005261.1 + 50879 0.66 0.586424
Target:  5'- uCGccGCGCUGGCGCuGcuAUGCUGgUCa -3'
miRNA:   3'- cGCucCGCGACCGCGcC--UGCGACgAG- -5'
23622 3' -62.5 NC_005261.1 + 137774 0.66 0.586424
Target:  5'- uGCGGGGCGCgcccccgGGCcccgccgcccGCGccGGCGCcgccccuggUGCUCg -3'
miRNA:   3'- -CGCUCCGCGa------CCG----------CGC--CUGCG---------ACGAG- -5'
23622 3' -62.5 NC_005261.1 + 16551 0.66 0.586424
Target:  5'- cGUGAGGUaCgucaGGCGCaGGACcUUGCUCu -3'
miRNA:   3'- -CGCUCCGcGa---CCGCG-CCUGcGACGAG- -5'
23622 3' -62.5 NC_005261.1 + 103915 0.66 0.586424
Target:  5'- cGCGccgccaggucGGGCGC-GGCGUcugccaGACGCUGCa- -3'
miRNA:   3'- -CGC----------UCCGCGaCCGCGc-----CUGCGACGag -5'
23622 3' -62.5 NC_005261.1 + 111983 0.66 0.586424
Target:  5'- gGCGGGGCGCUggaguccaugGGCcaguucuucguGCGGAuCGCcGCa- -3'
miRNA:   3'- -CGCUCCGCGA----------CCG-----------CGCCU-GCGaCGag -5'
23622 3' -62.5 NC_005261.1 + 101140 0.66 0.592334
Target:  5'- cGCGAGGCuGCc-GCGCGGcgGCGCgccgccgcgaagaGCUCc -3'
miRNA:   3'- -CGCUCCG-CGacCGCGCC--UGCGa------------CGAG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.