miRNA display CGI


Results 1 - 20 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23622 5' -51.6 NC_005261.1 + 76737 0.66 0.982742
Target:  5'- cUGGcCGACGUGCUCGcggaCGUGGCGc -3'
miRNA:   3'- cACUuGUUGUACGAGCag--GCGCUGUu -5'
23622 5' -51.6 NC_005261.1 + 90361 0.66 0.982742
Target:  5'- uGUGcuuCAcCAcGCUCGUgCGCGGCGAg -3'
miRNA:   3'- -CACuu-GUuGUaCGAGCAgGCGCUGUU- -5'
23622 5' -51.6 NC_005261.1 + 30401 0.66 0.982742
Target:  5'- gGUGGAgGACAUGCggG-CCGgGGCAc -3'
miRNA:   3'- -CACUUgUUGUACGagCaGGCgCUGUu -5'
23622 5' -51.6 NC_005261.1 + 52721 0.66 0.9806
Target:  5'- aGUG-ACGAgAUGCggCG-CCGCGGCGc -3'
miRNA:   3'- -CACuUGUUgUACGa-GCaGGCGCUGUu -5'
23622 5' -51.6 NC_005261.1 + 15460 0.66 0.978265
Target:  5'- -aGAGC-ACGUGguuCUCGaCCGCGGCGGa -3'
miRNA:   3'- caCUUGuUGUAC---GAGCaGGCGCUGUU- -5'
23622 5' -51.6 NC_005261.1 + 90677 0.66 0.978265
Target:  5'- cGUGAcgaccaucgggcGCGACAugcUGCUCGagaCGCGGCGGu -3'
miRNA:   3'- -CACU------------UGUUGU---ACGAGCag-GCGCUGUU- -5'
23622 5' -51.6 NC_005261.1 + 98111 0.66 0.978265
Target:  5'- -cGGGCGGCGagGCUgGggacgCCGCGGCAc -3'
miRNA:   3'- caCUUGUUGUa-CGAgCa----GGCGCUGUu -5'
23622 5' -51.6 NC_005261.1 + 138219 0.66 0.972984
Target:  5'- -cGGACGGCG-GCUCGgccgCCGCG-CGGu -3'
miRNA:   3'- caCUUGUUGUaCGAGCa---GGCGCuGUU- -5'
23622 5' -51.6 NC_005261.1 + 548 0.66 0.972984
Target:  5'- -cGGACGGCG-GCUCGgccgCCGCG-CGGu -3'
miRNA:   3'- caCUUGUUGUaCGAGCa---GGCGCuGUU- -5'
23622 5' -51.6 NC_005261.1 + 133657 0.67 0.97002
Target:  5'- -cGAGCGcuGCGUGCUCGccUCCgGCGcCAAc -3'
miRNA:   3'- caCUUGU--UGUACGAGC--AGG-CGCuGUU- -5'
23622 5' -51.6 NC_005261.1 + 108735 0.67 0.97002
Target:  5'- -cGGGcCAGCGgcgGCgccgcggCGUCCGCGGCGc -3'
miRNA:   3'- caCUU-GUUGUa--CGa------GCAGGCGCUGUu -5'
23622 5' -51.6 NC_005261.1 + 15718 0.67 0.959749
Target:  5'- gGUGGACGGCGaacgcgacgggGC-CGUCCGCGcGCAGg -3'
miRNA:   3'- -CACUUGUUGUa----------CGaGCAGGCGC-UGUU- -5'
23622 5' -51.6 NC_005261.1 + 91712 0.67 0.955844
Target:  5'- -cGGcuGCAagGCcgGCUCG-CCGCGGCGGg -3'
miRNA:   3'- caCU--UGU--UGuaCGAGCaGGCGCUGUU- -5'
23622 5' -51.6 NC_005261.1 + 15533 0.67 0.955844
Target:  5'- -gGAGCGGaagGCgUCGUUCGCGACGc -3'
miRNA:   3'- caCUUGUUguaCG-AGCAGGCGCUGUu -5'
23622 5' -51.6 NC_005261.1 + 40252 0.68 0.951689
Target:  5'- cGUGAGCGcCAUgGCggCGgCCGCGGCGGg -3'
miRNA:   3'- -CACUUGUuGUA-CGa-GCaGGCGCUGUU- -5'
23622 5' -51.6 NC_005261.1 + 60329 0.68 0.942614
Target:  5'- gGUGGACGACgGUGUUUGcggcgCCGCGGCc- -3'
miRNA:   3'- -CACUUGUUG-UACGAGCa----GGCGCUGuu -5'
23622 5' -51.6 NC_005261.1 + 49577 0.68 0.932497
Target:  5'- cGUGAAC-ACggGCUCGgggCgCGCGGCGc -3'
miRNA:   3'- -CACUUGuUGuaCGAGCa--G-GCGCUGUu -5'
23622 5' -51.6 NC_005261.1 + 63166 0.68 0.932497
Target:  5'- cGUGucCGACGUGC---UCCGCGACAc -3'
miRNA:   3'- -CACuuGUUGUACGagcAGGCGCUGUu -5'
23622 5' -51.6 NC_005261.1 + 90486 0.69 0.921325
Target:  5'- cUGcuCAGCGUGCUgcUCCGCGACu- -3'
miRNA:   3'- cACuuGUUGUACGAgcAGGCGCUGuu -5'
23622 5' -51.6 NC_005261.1 + 127792 0.69 0.909099
Target:  5'- -cGAGCGGCggGC-CGgcgCCGCGGCGg -3'
miRNA:   3'- caCUUGUUGuaCGaGCa--GGCGCUGUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.