Results 21 - 36 of 36 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
23622 | 5' | -51.6 | NC_005261.1 | + | 14749 | 0.7 | 0.881548 |
Target: 5'- -gGGGCGAUcgGCgccgCG-CCGCGACAGg -3' miRNA: 3'- caCUUGUUGuaCGa---GCaGGCGCUGUU- -5' |
|||||||
23622 | 5' | -51.6 | NC_005261.1 | + | 107891 | 0.7 | 0.874036 |
Target: 5'- ---cGCGGCccGCUUGUCCGCGGCc- -3' miRNA: 3'- cacuUGUUGuaCGAGCAGGCGCUGuu -5' |
|||||||
23622 | 5' | -51.6 | NC_005261.1 | + | 100497 | 0.7 | 0.874036 |
Target: 5'- -aGAGCGGCGUGC-CGUCgGCGucCAGg -3' miRNA: 3'- caCUUGUUGUACGaGCAGgCGCu-GUU- -5' |
|||||||
23622 | 5' | -51.6 | NC_005261.1 | + | 120434 | 0.7 | 0.858302 |
Target: 5'- gGUGAACAugcgcggcgugcGCcUGCUC-UCCGCGAUAGa -3' miRNA: 3'- -CACUUGU------------UGuACGAGcAGGCGCUGUU- -5' |
|||||||
23622 | 5' | -51.6 | NC_005261.1 | + | 70249 | 0.71 | 0.850093 |
Target: 5'- -cGAccuCGGCGcGCUUGUCCGCGAUGAg -3' miRNA: 3'- caCUu--GUUGUaCGAGCAGGCGCUGUU- -5' |
|||||||
23622 | 5' | -51.6 | NC_005261.1 | + | 103514 | 0.71 | 0.824186 |
Target: 5'- -cGGACGGCGg---CGUCCGCGGCAu -3' miRNA: 3'- caCUUGUUGUacgaGCAGGCGCUGUu -5' |
|||||||
23622 | 5' | -51.6 | NC_005261.1 | + | 63890 | 0.72 | 0.78699 |
Target: 5'- -cGAAgAGCAUGUUC-UCCGUGGCGAa -3' miRNA: 3'- caCUUgUUGUACGAGcAGGCGCUGUU- -5' |
|||||||
23622 | 5' | -51.6 | NC_005261.1 | + | 54948 | 0.72 | 0.805936 |
Target: 5'- -cGAGCAGCucGUGCUCGaagUCgGCGGCAc -3' miRNA: 3'- caCUUGUUG--UACGAGC---AGgCGCUGUu -5' |
|||||||
23622 | 5' | -51.6 | NC_005261.1 | + | 71510 | 0.73 | 0.747336 |
Target: 5'- -cGAAaguCGGCggGCUCGUCCGCGuACGAc -3' miRNA: 3'- caCUU---GUUGuaCGAGCAGGCGC-UGUU- -5' |
|||||||
23622 | 5' | -51.6 | NC_005261.1 | + | 48804 | 0.73 | 0.747336 |
Target: 5'- cGUGAGgc-CGUGCgcggCGUCCGCGACGc -3' miRNA: 3'- -CACUUguuGUACGa---GCAGGCGCUGUu -5' |
|||||||
23622 | 5' | -51.6 | NC_005261.1 | + | 55065 | 0.74 | 0.695335 |
Target: 5'- -cGAGCucggccgccgaaGGCAUGCgcagacucgCGUCCGCGACAAa -3' miRNA: 3'- caCUUG------------UUGUACGa--------GCAGGCGCUGUU- -5' |
|||||||
23622 | 5' | -51.6 | NC_005261.1 | + | 101028 | 0.75 | 0.635413 |
Target: 5'- uGUGAACGcgGCcggcagccgcgcguaGUGCUCGUCCGCGcGCAGc -3' miRNA: 3'- -CACUUGU--UG---------------UACGAGCAGGCGC-UGUU- -5' |
|||||||
23622 | 5' | -51.6 | NC_005261.1 | + | 124600 | 0.75 | 0.63111 |
Target: 5'- uUGGGCGGCGUGCggcauagcgCGUCCaGCGGCAu -3' miRNA: 3'- cACUUGUUGUACGa--------GCAGG-CGCUGUu -5' |
|||||||
23622 | 5' | -51.6 | NC_005261.1 | + | 63727 | 0.77 | 0.535349 |
Target: 5'- cGUGAGCGGCGUGCgcauggCCGCGGCGg -3' miRNA: 3'- -CACUUGUUGUACGagca--GGCGCUGUu -5' |
|||||||
23622 | 5' | -51.6 | NC_005261.1 | + | 112478 | 0.85 | 0.185807 |
Target: 5'- aUGcGCGGCAUGCUCGcCCGCGACGAg -3' miRNA: 3'- cACuUGUUGUACGAGCaGGCGCUGUU- -5' |
|||||||
23622 | 5' | -51.6 | NC_005261.1 | + | 77116 | 1.07 | 0.007968 |
Target: 5'- cGUGAACAACAUGCUCGUCCGCGACAAg -3' miRNA: 3'- -CACUUGUUGUACGAGCAGGCGCUGUU- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home