miRNA display CGI


Results 21 - 36 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23622 5' -51.6 NC_005261.1 + 14749 0.7 0.881548
Target:  5'- -gGGGCGAUcgGCgccgCG-CCGCGACAGg -3'
miRNA:   3'- caCUUGUUGuaCGa---GCaGGCGCUGUU- -5'
23622 5' -51.6 NC_005261.1 + 107891 0.7 0.874036
Target:  5'- ---cGCGGCccGCUUGUCCGCGGCc- -3'
miRNA:   3'- cacuUGUUGuaCGAGCAGGCGCUGuu -5'
23622 5' -51.6 NC_005261.1 + 100497 0.7 0.874036
Target:  5'- -aGAGCGGCGUGC-CGUCgGCGucCAGg -3'
miRNA:   3'- caCUUGUUGUACGaGCAGgCGCu-GUU- -5'
23622 5' -51.6 NC_005261.1 + 120434 0.7 0.858302
Target:  5'- gGUGAACAugcgcggcgugcGCcUGCUC-UCCGCGAUAGa -3'
miRNA:   3'- -CACUUGU------------UGuACGAGcAGGCGCUGUU- -5'
23622 5' -51.6 NC_005261.1 + 70249 0.71 0.850093
Target:  5'- -cGAccuCGGCGcGCUUGUCCGCGAUGAg -3'
miRNA:   3'- caCUu--GUUGUaCGAGCAGGCGCUGUU- -5'
23622 5' -51.6 NC_005261.1 + 103514 0.71 0.824186
Target:  5'- -cGGACGGCGg---CGUCCGCGGCAu -3'
miRNA:   3'- caCUUGUUGUacgaGCAGGCGCUGUu -5'
23622 5' -51.6 NC_005261.1 + 54948 0.72 0.805936
Target:  5'- -cGAGCAGCucGUGCUCGaagUCgGCGGCAc -3'
miRNA:   3'- caCUUGUUG--UACGAGC---AGgCGCUGUu -5'
23622 5' -51.6 NC_005261.1 + 63890 0.72 0.78699
Target:  5'- -cGAAgAGCAUGUUC-UCCGUGGCGAa -3'
miRNA:   3'- caCUUgUUGUACGAGcAGGCGCUGUU- -5'
23622 5' -51.6 NC_005261.1 + 71510 0.73 0.747336
Target:  5'- -cGAAaguCGGCggGCUCGUCCGCGuACGAc -3'
miRNA:   3'- caCUU---GUUGuaCGAGCAGGCGC-UGUU- -5'
23622 5' -51.6 NC_005261.1 + 48804 0.73 0.747336
Target:  5'- cGUGAGgc-CGUGCgcggCGUCCGCGACGc -3'
miRNA:   3'- -CACUUguuGUACGa---GCAGGCGCUGUu -5'
23622 5' -51.6 NC_005261.1 + 55065 0.74 0.695335
Target:  5'- -cGAGCucggccgccgaaGGCAUGCgcagacucgCGUCCGCGACAAa -3'
miRNA:   3'- caCUUG------------UUGUACGa--------GCAGGCGCUGUU- -5'
23622 5' -51.6 NC_005261.1 + 101028 0.75 0.635413
Target:  5'- uGUGAACGcgGCcggcagccgcgcguaGUGCUCGUCCGCGcGCAGc -3'
miRNA:   3'- -CACUUGU--UG---------------UACGAGCAGGCGC-UGUU- -5'
23622 5' -51.6 NC_005261.1 + 124600 0.75 0.63111
Target:  5'- uUGGGCGGCGUGCggcauagcgCGUCCaGCGGCAu -3'
miRNA:   3'- cACUUGUUGUACGa--------GCAGG-CGCUGUu -5'
23622 5' -51.6 NC_005261.1 + 63727 0.77 0.535349
Target:  5'- cGUGAGCGGCGUGCgcauggCCGCGGCGg -3'
miRNA:   3'- -CACUUGUUGUACGagca--GGCGCUGUu -5'
23622 5' -51.6 NC_005261.1 + 112478 0.85 0.185807
Target:  5'- aUGcGCGGCAUGCUCGcCCGCGACGAg -3'
miRNA:   3'- cACuUGUUGUACGAGCaGGCGCUGUU- -5'
23622 5' -51.6 NC_005261.1 + 77116 1.07 0.007968
Target:  5'- cGUGAACAACAUGCUCGUCCGCGACAAg -3'
miRNA:   3'- -CACUUGUUGUACGAGCAGGCGCUGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.