miRNA display CGI


Results 1 - 20 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23622 5' -51.6 NC_005261.1 + 548 0.66 0.972984
Target:  5'- -cGGACGGCG-GCUCGgccgCCGCG-CGGu -3'
miRNA:   3'- caCUUGUUGUaCGAGCa---GGCGCuGUU- -5'
23622 5' -51.6 NC_005261.1 + 14749 0.7 0.881548
Target:  5'- -gGGGCGAUcgGCgccgCG-CCGCGACAGg -3'
miRNA:   3'- caCUUGUUGuaCGa---GCaGGCGCUGUU- -5'
23622 5' -51.6 NC_005261.1 + 15460 0.66 0.978265
Target:  5'- -aGAGC-ACGUGguuCUCGaCCGCGGCGGa -3'
miRNA:   3'- caCUUGuUGUAC---GAGCaGGCGCUGUU- -5'
23622 5' -51.6 NC_005261.1 + 15533 0.67 0.955844
Target:  5'- -gGAGCGGaagGCgUCGUUCGCGACGc -3'
miRNA:   3'- caCUUGUUguaCG-AGCAGGCGCUGUu -5'
23622 5' -51.6 NC_005261.1 + 15718 0.67 0.959749
Target:  5'- gGUGGACGGCGaacgcgacgggGC-CGUCCGCGcGCAGg -3'
miRNA:   3'- -CACUUGUUGUa----------CGaGCAGGCGC-UGUU- -5'
23622 5' -51.6 NC_005261.1 + 30401 0.66 0.982742
Target:  5'- gGUGGAgGACAUGCggG-CCGgGGCAc -3'
miRNA:   3'- -CACUUgUUGUACGagCaGGCgCUGUu -5'
23622 5' -51.6 NC_005261.1 + 40252 0.68 0.951689
Target:  5'- cGUGAGCGcCAUgGCggCGgCCGCGGCGGg -3'
miRNA:   3'- -CACUUGUuGUA-CGa-GCaGGCGCUGUU- -5'
23622 5' -51.6 NC_005261.1 + 48804 0.73 0.747336
Target:  5'- cGUGAGgc-CGUGCgcggCGUCCGCGACGc -3'
miRNA:   3'- -CACUUguuGUACGa---GCAGGCGCUGUu -5'
23622 5' -51.6 NC_005261.1 + 49577 0.68 0.932497
Target:  5'- cGUGAAC-ACggGCUCGgggCgCGCGGCGc -3'
miRNA:   3'- -CACUUGuUGuaCGAGCa--G-GCGCUGUu -5'
23622 5' -51.6 NC_005261.1 + 52721 0.66 0.9806
Target:  5'- aGUG-ACGAgAUGCggCG-CCGCGGCGc -3'
miRNA:   3'- -CACuUGUUgUACGa-GCaGGCGCUGUu -5'
23622 5' -51.6 NC_005261.1 + 54948 0.72 0.805936
Target:  5'- -cGAGCAGCucGUGCUCGaagUCgGCGGCAc -3'
miRNA:   3'- caCUUGUUG--UACGAGC---AGgCGCUGUu -5'
23622 5' -51.6 NC_005261.1 + 55065 0.74 0.695335
Target:  5'- -cGAGCucggccgccgaaGGCAUGCgcagacucgCGUCCGCGACAAa -3'
miRNA:   3'- caCUUG------------UUGUACGa--------GCAGGCGCUGUU- -5'
23622 5' -51.6 NC_005261.1 + 60329 0.68 0.942614
Target:  5'- gGUGGACGACgGUGUUUGcggcgCCGCGGCc- -3'
miRNA:   3'- -CACUUGUUG-UACGAGCa----GGCGCUGuu -5'
23622 5' -51.6 NC_005261.1 + 63166 0.68 0.932497
Target:  5'- cGUGucCGACGUGC---UCCGCGACAc -3'
miRNA:   3'- -CACuuGUUGUACGagcAGGCGCUGUu -5'
23622 5' -51.6 NC_005261.1 + 63727 0.77 0.535349
Target:  5'- cGUGAGCGGCGUGCgcauggCCGCGGCGg -3'
miRNA:   3'- -CACUUGUUGUACGagca--GGCGCUGUu -5'
23622 5' -51.6 NC_005261.1 + 63890 0.72 0.78699
Target:  5'- -cGAAgAGCAUGUUC-UCCGUGGCGAa -3'
miRNA:   3'- caCUUgUUGUACGAGcAGGCGCUGUU- -5'
23622 5' -51.6 NC_005261.1 + 70249 0.71 0.850093
Target:  5'- -cGAccuCGGCGcGCUUGUCCGCGAUGAg -3'
miRNA:   3'- caCUu--GUUGUaCGAGCAGGCGCUGUU- -5'
23622 5' -51.6 NC_005261.1 + 71510 0.73 0.747336
Target:  5'- -cGAAaguCGGCggGCUCGUCCGCGuACGAc -3'
miRNA:   3'- caCUU---GUUGuaCGAGCAGGCGC-UGUU- -5'
23622 5' -51.6 NC_005261.1 + 76737 0.66 0.982742
Target:  5'- cUGGcCGACGUGCUCGcggaCGUGGCGc -3'
miRNA:   3'- cACUuGUUGUACGAGCag--GCGCUGUu -5'
23622 5' -51.6 NC_005261.1 + 77116 1.07 0.007968
Target:  5'- cGUGAACAACAUGCUCGUCCGCGACAAg -3'
miRNA:   3'- -CACUUGUUGUACGAGCAGGCGCUGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.