miRNA display CGI


Results 21 - 36 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23622 5' -51.6 NC_005261.1 + 90361 0.66 0.982742
Target:  5'- uGUGcuuCAcCAcGCUCGUgCGCGGCGAg -3'
miRNA:   3'- -CACuu-GUuGUaCGAGCAgGCGCUGUU- -5'
23622 5' -51.6 NC_005261.1 + 90486 0.69 0.921325
Target:  5'- cUGcuCAGCGUGCUgcUCCGCGACu- -3'
miRNA:   3'- cACuuGUUGUACGAgcAGGCGCUGuu -5'
23622 5' -51.6 NC_005261.1 + 90677 0.66 0.978265
Target:  5'- cGUGAcgaccaucgggcGCGACAugcUGCUCGagaCGCGGCGGu -3'
miRNA:   3'- -CACU------------UGUUGU---ACGAGCag-GCGCUGUU- -5'
23622 5' -51.6 NC_005261.1 + 91712 0.67 0.955844
Target:  5'- -cGGcuGCAagGCcgGCUCG-CCGCGGCGGg -3'
miRNA:   3'- caCU--UGU--UGuaCGAGCaGGCGCUGUU- -5'
23622 5' -51.6 NC_005261.1 + 98111 0.66 0.978265
Target:  5'- -cGGGCGGCGagGCUgGggacgCCGCGGCAc -3'
miRNA:   3'- caCUUGUUGUa-CGAgCa----GGCGCUGUu -5'
23622 5' -51.6 NC_005261.1 + 100497 0.7 0.874036
Target:  5'- -aGAGCGGCGUGC-CGUCgGCGucCAGg -3'
miRNA:   3'- caCUUGUUGUACGaGCAGgCGCu-GUU- -5'
23622 5' -51.6 NC_005261.1 + 101028 0.75 0.635413
Target:  5'- uGUGAACGcgGCcggcagccgcgcguaGUGCUCGUCCGCGcGCAGc -3'
miRNA:   3'- -CACUUGU--UG---------------UACGAGCAGGCGC-UGUU- -5'
23622 5' -51.6 NC_005261.1 + 103514 0.71 0.824186
Target:  5'- -cGGACGGCGg---CGUCCGCGGCAu -3'
miRNA:   3'- caCUUGUUGUacgaGCAGGCGCUGUu -5'
23622 5' -51.6 NC_005261.1 + 107891 0.7 0.874036
Target:  5'- ---cGCGGCccGCUUGUCCGCGGCc- -3'
miRNA:   3'- cacuUGUUGuaCGAGCAGGCGCUGuu -5'
23622 5' -51.6 NC_005261.1 + 108735 0.67 0.97002
Target:  5'- -cGGGcCAGCGgcgGCgccgcggCGUCCGCGGCGc -3'
miRNA:   3'- caCUU-GUUGUa--CGa------GCAGGCGCUGUu -5'
23622 5' -51.6 NC_005261.1 + 112478 0.85 0.185807
Target:  5'- aUGcGCGGCAUGCUCGcCCGCGACGAg -3'
miRNA:   3'- cACuUGUUGUACGAGCaGGCGCUGUU- -5'
23622 5' -51.6 NC_005261.1 + 120434 0.7 0.858302
Target:  5'- gGUGAACAugcgcggcgugcGCcUGCUC-UCCGCGAUAGa -3'
miRNA:   3'- -CACUUGU------------UGuACGAGcAGGCGCUGUU- -5'
23622 5' -51.6 NC_005261.1 + 124600 0.75 0.63111
Target:  5'- uUGGGCGGCGUGCggcauagcgCGUCCaGCGGCAu -3'
miRNA:   3'- cACUUGUUGUACGa--------GCAGG-CGCUGUu -5'
23622 5' -51.6 NC_005261.1 + 127792 0.69 0.909099
Target:  5'- -cGAGCGGCggGC-CGgcgCCGCGGCGg -3'
miRNA:   3'- caCUUGUUGuaCGaGCa--GGCGCUGUu -5'
23622 5' -51.6 NC_005261.1 + 133657 0.67 0.97002
Target:  5'- -cGAGCGcuGCGUGCUCGccUCCgGCGcCAAc -3'
miRNA:   3'- caCUUGU--UGUACGAGC--AGG-CGCuGUU- -5'
23622 5' -51.6 NC_005261.1 + 138219 0.66 0.972984
Target:  5'- -cGGACGGCG-GCUCGgccgCCGCG-CGGu -3'
miRNA:   3'- caCUUGUUGUaCGAGCa---GGCGCuGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.