miRNA display CGI


Results 41 - 60 of 137 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23623 3' -60.4 NC_005261.1 + 101457 0.83 0.078592
Target:  5'- --cGCUGGCCCcagcgcCGCCGGCGGCGGCGu -3'
miRNA:   3'- gcaCGACCGGGa-----GCGGCUGCUGCUGC- -5'
23623 3' -60.4 NC_005261.1 + 100642 0.66 0.74542
Target:  5'- gCGcGC-GGCCCgCGCCGcaACGGCGcGCGu -3'
miRNA:   3'- -GCaCGaCCGGGaGCGGC--UGCUGC-UGC- -5'
23623 3' -60.4 NC_005261.1 + 98308 0.66 0.754715
Target:  5'- uCGgggGCgGGCgC-CGCCGccaGCGGCGGCGc -3'
miRNA:   3'- -GCa--CGaCCGgGaGCGGC---UGCUGCUGC- -5'
23623 3' -60.4 NC_005261.1 + 96118 0.73 0.350634
Target:  5'- aCGUcGCUGGCCauggUCGaCCuGCGGCGGCGg -3'
miRNA:   3'- -GCA-CGACCGGg---AGC-GGcUGCUGCUGC- -5'
23623 3' -60.4 NC_005261.1 + 95796 0.66 0.736033
Target:  5'- gCGcUGCUaGCCggCGCCGGCGGgGGCu -3'
miRNA:   3'- -GC-ACGAcCGGgaGCGGCUGCUgCUGc -5'
23623 3' -60.4 NC_005261.1 + 94608 0.68 0.58965
Target:  5'- aCGaGCgcgcGCCCUCGCCGcCGcCGGCGc -3'
miRNA:   3'- -GCaCGac--CGGGAGCGGCuGCuGCUGC- -5'
23623 3' -60.4 NC_005261.1 + 93520 0.68 0.608322
Target:  5'- cCGUGUUGGCCgCgaggaagcccgcgcgCGCCGcccaguagcgguCGACGGCGg -3'
miRNA:   3'- -GCACGACCGG-Ga--------------GCGGCu-----------GCUGCUGC- -5'
23623 3' -60.4 NC_005261.1 + 91209 0.7 0.507004
Target:  5'- cCGUGCUggccgaGGCCCacgccaagaUCGCCGAcccggcgcuggacauCGGCGACu -3'
miRNA:   3'- -GCACGA------CCGGG---------AGCGGCU---------------GCUGCUGc -5'
23623 3' -60.4 NC_005261.1 + 90376 0.73 0.343172
Target:  5'- uCGUGCgcggcgaGGCCC-CGCCGGCGGggcUGGCGc -3'
miRNA:   3'- -GCACGa------CCGGGaGCGGCUGCU---GCUGC- -5'
23623 3' -60.4 NC_005261.1 + 89088 0.66 0.754715
Target:  5'- cCG-GCUgcGGCCCgggcgCGCUGGCGcgcGCGugGc -3'
miRNA:   3'- -GCaCGA--CCGGGa----GCGGCUGC---UGCugC- -5'
23623 3' -60.4 NC_005261.1 + 88775 0.67 0.648755
Target:  5'- --cGCUccucGGCCCUgGCCGcCGGCGcCGc -3'
miRNA:   3'- gcaCGA----CCGGGAgCGGCuGCUGCuGC- -5'
23623 3' -60.4 NC_005261.1 + 88444 0.66 0.717016
Target:  5'- cCGcUGCUGGCCg-CGCCGcgugagcgUGugGGCGg -3'
miRNA:   3'- -GC-ACGACCGGgaGCGGCu-------GCugCUGC- -5'
23623 3' -60.4 NC_005261.1 + 87497 0.72 0.388037
Target:  5'- cCGUGCUGGCgCgcaggcgcucgcCGCCGugGAaGACGa -3'
miRNA:   3'- -GCACGACCGgGa-----------GCGGCugCUgCUGC- -5'
23623 3' -60.4 NC_005261.1 + 82882 0.74 0.321476
Target:  5'- --cGCUGGCgguggCCUCGCCGcGCGcCGACGa -3'
miRNA:   3'- gcaCGACCG-----GGAGCGGC-UGCuGCUGC- -5'
23623 3' -60.4 NC_005261.1 + 82046 0.72 0.389651
Target:  5'- gGUGCgucagcgcgGGCCacgUCGCCGGguCGACGGCGu -3'
miRNA:   3'- gCACGa--------CCGGg--AGCGGCU--GCUGCUGC- -5'
23623 3' -60.4 NC_005261.1 + 78086 0.68 0.609307
Target:  5'- --cGCUGGCCCccgCGCCGGCccaGGCc -3'
miRNA:   3'- gcaCGACCGGGa--GCGGCUGcugCUGc -5'
23623 3' -60.4 NC_005261.1 + 77641 0.71 0.466621
Target:  5'- --gGCcGGCgCCaUCGCCGACGGcCGGCGc -3'
miRNA:   3'- gcaCGaCCG-GG-AGCGGCUGCU-GCUGC- -5'
23623 3' -60.4 NC_005261.1 + 76920 0.68 0.619162
Target:  5'- gCGUGCUGGgCCgccgCGUCGggaccaucguuACGuACGACGc -3'
miRNA:   3'- -GCACGACCgGGa---GCGGC-----------UGC-UGCUGC- -5'
23623 3' -60.4 NC_005261.1 + 76735 0.68 0.609307
Target:  5'- --aGCUGGCCgacgugCUCGCgGACGugG-CGc -3'
miRNA:   3'- gcaCGACCGG------GAGCGgCUGCugCuGC- -5'
23623 3' -60.4 NC_005261.1 + 76672 1.08 0.001544
Target:  5'- cCGUGCUGGCCCUCGCCGACGACGACGc -3'
miRNA:   3'- -GCACGACCGGGAGCGGCUGCUGCUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.