miRNA display CGI


Results 61 - 80 of 137 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23623 3' -60.4 NC_005261.1 + 30295 0.69 0.532508
Target:  5'- --cGCUGGCCCgcgcgcucuucagccCGCCGGCGGaagugcCGGCGc -3'
miRNA:   3'- gcaCGACCGGGa--------------GCGGCUGCU------GCUGC- -5'
23623 3' -60.4 NC_005261.1 + 73779 0.69 0.531555
Target:  5'- --cGCUGGCCUgcgacgugCGCgCGGCGGuCGGCGc -3'
miRNA:   3'- gcaCGACCGGGa-------GCG-GCUGCU-GCUGC- -5'
23623 3' -60.4 NC_005261.1 + 29798 0.69 0.531555
Target:  5'- --cGgaGGCCggCGCCGGCGGCG-CGg -3'
miRNA:   3'- gcaCgaCCGGgaGCGGCUGCUGCuGC- -5'
23623 3' -60.4 NC_005261.1 + 43393 0.69 0.531555
Target:  5'- gGUGCcGGCaCCguccaggCGCCGGgGGCGGCc -3'
miRNA:   3'- gCACGaCCG-GGa------GCGGCUgCUGCUGc -5'
23623 3' -60.4 NC_005261.1 + 60026 0.68 0.638894
Target:  5'- --cGaaGaGCCCgccgccgucggCGCCGACGGCGGCGg -3'
miRNA:   3'- gcaCgaC-CGGGa----------GCGGCUGCUGCUGC- -5'
23623 3' -60.4 NC_005261.1 + 133963 0.68 0.638894
Target:  5'- -aUGUUcGGCCUUUGCCGcaACGACGcCGa -3'
miRNA:   3'- gcACGA-CCGGGAGCGGC--UGCUGCuGC- -5'
23623 3' -60.4 NC_005261.1 + 673 0.68 0.638894
Target:  5'- aGUcCUGGCCCUcCGCgGACGcuccgcauCGGCGc -3'
miRNA:   3'- gCAcGACCGGGA-GCGgCUGCu-------GCUGC- -5'
23623 3' -60.4 NC_005261.1 + 4660 0.68 0.629027
Target:  5'- aGUGUcGGCCg-CGgCGGCGGCGGCc -3'
miRNA:   3'- gCACGaCCGGgaGCgGCUGCUGCUGc -5'
23623 3' -60.4 NC_005261.1 + 33789 0.68 0.619162
Target:  5'- --cGCUgGGCCCcgCGCgGGCGGCGGg- -3'
miRNA:   3'- gcaCGA-CCGGGa-GCGgCUGCUGCUgc -5'
23623 3' -60.4 NC_005261.1 + 2412 0.68 0.619162
Target:  5'- --cGCgGGCCC-CGCgCGGCGGCGGg- -3'
miRNA:   3'- gcaCGaCCGGGaGCG-GCUGCUGCUgc -5'
23623 3' -60.4 NC_005261.1 + 16414 0.68 0.619162
Target:  5'- gGUGCgggagaGGCCCccUCGaCGGCGgGCGGCGg -3'
miRNA:   3'- gCACGa-----CCGGG--AGCgGCUGC-UGCUGC- -5'
23623 3' -60.4 NC_005261.1 + 76920 0.68 0.619162
Target:  5'- gCGUGCUGGgCCgccgCGUCGggaccaucguuACGuACGACGc -3'
miRNA:   3'- -GCACGACCgGGa---GCGGC-----------UGC-UGCUGC- -5'
23623 3' -60.4 NC_005261.1 + 78086 0.68 0.609307
Target:  5'- --cGCUGGCCCccgCGCCGGCccaGGCc -3'
miRNA:   3'- gcaCGACCGGGa--GCGGCUGcugCUGc -5'
23623 3' -60.4 NC_005261.1 + 76735 0.68 0.609307
Target:  5'- --aGCUGGCCgacgugCUCGCgGACGugG-CGc -3'
miRNA:   3'- gcaCGACCGG------GAGCGgCUGCugCuGC- -5'
23623 3' -60.4 NC_005261.1 + 65575 0.68 0.609307
Target:  5'- aGUGCcgcaccUGGUCCgcgagcuccugcUCGCCGGgguCGGCGACGu -3'
miRNA:   3'- gCACG------ACCGGG------------AGCGGCU---GCUGCUGC- -5'
23623 3' -60.4 NC_005261.1 + 23162 0.68 0.609307
Target:  5'- aGUG--GGCCCggcaggcgCGCCGGgGGCGACa -3'
miRNA:   3'- gCACgaCCGGGa-------GCGGCUgCUGCUGc -5'
23623 3' -60.4 NC_005261.1 + 93520 0.68 0.608322
Target:  5'- cCGUGUUGGCCgCgaggaagcccgcgcgCGCCGcccaguagcgguCGACGGCGg -3'
miRNA:   3'- -GCACGACCGG-Ga--------------GCGGCu-----------GCUGCUGC- -5'
23623 3' -60.4 NC_005261.1 + 9524 0.68 0.603401
Target:  5'- aCGaucCUGGagCCUCGCCGACGaccccccggaagccuGCGACGa -3'
miRNA:   3'- -GCac-GACCg-GGAGCGGCUGC---------------UGCUGC- -5'
23623 3' -60.4 NC_005261.1 + 135013 0.68 0.599467
Target:  5'- gCG-GCgGGCCCgcacgCgGCCG-CGGCGGCGa -3'
miRNA:   3'- -GCaCGaCCGGGa----G-CGGCuGCUGCUGC- -5'
23623 3' -60.4 NC_005261.1 + 2269 0.68 0.599467
Target:  5'- --cGCUcGUCCUCGCCGgGCGGCGcCGc -3'
miRNA:   3'- gcaCGAcCGGGAGCGGC-UGCUGCuGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.