miRNA display CGI


Results 61 - 80 of 137 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23623 3' -60.4 NC_005261.1 + 118381 0.69 0.570108
Target:  5'- gCGcGC-GGCCCgaggCGCUGGCGGCcGCGg -3'
miRNA:   3'- -GCaCGaCCGGGa---GCGGCUGCUGcUGC- -5'
23623 3' -60.4 NC_005261.1 + 5912 0.69 0.579862
Target:  5'- cCGgccgGCUGGCUagCUCGCuCGACGGCaaGGCu -3'
miRNA:   3'- -GCa---CGACCGG--GAGCG-GCUGCUG--CUGc -5'
23623 3' -60.4 NC_005261.1 + 4464 0.69 0.579862
Target:  5'- gCGgcgGC-GGCCCgUCGCgCGGCGccGCGGCGu -3'
miRNA:   3'- -GCa--CGaCCGGG-AGCG-GCUGC--UGCUGC- -5'
23623 3' -60.4 NC_005261.1 + 105144 0.69 0.579862
Target:  5'- gCGcGCaGGUCCUCGCggcuCGAgGGCGGCGu -3'
miRNA:   3'- -GCaCGaCCGGGAGCG----GCUgCUGCUGC- -5'
23623 3' -60.4 NC_005261.1 + 94608 0.68 0.58965
Target:  5'- aCGaGCgcgcGCCCUCGCCGcCGcCGGCGc -3'
miRNA:   3'- -GCaCGac--CGGGAGCGGCuGCuGCUGC- -5'
23623 3' -60.4 NC_005261.1 + 121813 0.68 0.58965
Target:  5'- gCGUgGCUgGGCUCUgcgggcCGCCG-CGGCGGCGc -3'
miRNA:   3'- -GCA-CGA-CCGGGA------GCGGCuGCUGCUGC- -5'
23623 3' -60.4 NC_005261.1 + 76423 0.68 0.593574
Target:  5'- gCGUGCagagcgccggcgccaUGGCggaCgCGcCCGACGGCGACGg -3'
miRNA:   3'- -GCACG---------------ACCGg--GaGC-GGCUGCUGCUGC- -5'
23623 3' -60.4 NC_005261.1 + 10874 0.68 0.598484
Target:  5'- aCGUGUUcuuccccGaGCCCggCGCCaACGGCGGCGg -3'
miRNA:   3'- -GCACGA-------C-CGGGa-GCGGcUGCUGCUGC- -5'
23623 3' -60.4 NC_005261.1 + 135013 0.68 0.599467
Target:  5'- gCG-GCgGGCCCgcacgCgGCCG-CGGCGGCGa -3'
miRNA:   3'- -GCaCGaCCGGGa----G-CGGCuGCUGCUGC- -5'
23623 3' -60.4 NC_005261.1 + 2269 0.68 0.599467
Target:  5'- --cGCUcGUCCUCGCCGgGCGGCGcCGc -3'
miRNA:   3'- gcaCGAcCGGGAGCGGC-UGCUGCuGC- -5'
23623 3' -60.4 NC_005261.1 + 9524 0.68 0.603401
Target:  5'- aCGaucCUGGagCCUCGCCGACGaccccccggaagccuGCGACGa -3'
miRNA:   3'- -GCac-GACCg-GGAGCGGCUGC---------------UGCUGC- -5'
23623 3' -60.4 NC_005261.1 + 93520 0.68 0.608322
Target:  5'- cCGUGUUGGCCgCgaggaagcccgcgcgCGCCGcccaguagcgguCGACGGCGg -3'
miRNA:   3'- -GCACGACCGG-Ga--------------GCGGCu-----------GCUGCUGC- -5'
23623 3' -60.4 NC_005261.1 + 78086 0.68 0.609307
Target:  5'- --cGCUGGCCCccgCGCCGGCccaGGCc -3'
miRNA:   3'- gcaCGACCGGGa--GCGGCUGcugCUGc -5'
23623 3' -60.4 NC_005261.1 + 76735 0.68 0.609307
Target:  5'- --aGCUGGCCgacgugCUCGCgGACGugG-CGc -3'
miRNA:   3'- gcaCGACCGG------GAGCGgCUGCugCuGC- -5'
23623 3' -60.4 NC_005261.1 + 65575 0.68 0.609307
Target:  5'- aGUGCcgcaccUGGUCCgcgagcuccugcUCGCCGGgguCGGCGACGu -3'
miRNA:   3'- gCACG------ACCGGG------------AGCGGCU---GCUGCUGC- -5'
23623 3' -60.4 NC_005261.1 + 23162 0.68 0.609307
Target:  5'- aGUG--GGCCCggcaggcgCGCCGGgGGCGACa -3'
miRNA:   3'- gCACgaCCGGGa-------GCGGCUgCUGCUGc -5'
23623 3' -60.4 NC_005261.1 + 33789 0.68 0.619162
Target:  5'- --cGCUgGGCCCcgCGCgGGCGGCGGg- -3'
miRNA:   3'- gcaCGA-CCGGGa-GCGgCUGCUGCUgc -5'
23623 3' -60.4 NC_005261.1 + 2412 0.68 0.619162
Target:  5'- --cGCgGGCCC-CGCgCGGCGGCGGg- -3'
miRNA:   3'- gcaCGaCCGGGaGCG-GCUGCUGCUgc -5'
23623 3' -60.4 NC_005261.1 + 16414 0.68 0.619162
Target:  5'- gGUGCgggagaGGCCCccUCGaCGGCGgGCGGCGg -3'
miRNA:   3'- gCACGa-----CCGGG--AGCgGCUGC-UGCUGC- -5'
23623 3' -60.4 NC_005261.1 + 76920 0.68 0.619162
Target:  5'- gCGUGCUGGgCCgccgCGUCGggaccaucguuACGuACGACGc -3'
miRNA:   3'- -GCACGACCgGGa---GCGGC-----------UGC-UGCUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.