miRNA display CGI


Results 61 - 80 of 137 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23623 3' -60.4 NC_005261.1 + 63008 0.66 0.726563
Target:  5'- uCGgcgGCcGcGCCCgcgcgggCGCCGGCGcccGCGGCGa -3'
miRNA:   3'- -GCa--CGaC-CGGGa------GCGGCUGC---UGCUGC- -5'
23623 3' -60.4 NC_005261.1 + 65575 0.68 0.609307
Target:  5'- aGUGCcgcaccUGGUCCgcgagcuccugcUCGCCGGgguCGGCGACGu -3'
miRNA:   3'- gCACG------ACCGGG------------AGCGGCU---GCUGCUGC- -5'
23623 3' -60.4 NC_005261.1 + 67126 0.67 0.648755
Target:  5'- aGUGCggcGGCCCgaccgcggCGcCCGuuuuauacccacGCGGCGGCGg -3'
miRNA:   3'- gCACGa--CCGGGa-------GC-GGC------------UGCUGCUGC- -5'
23623 3' -60.4 NC_005261.1 + 67508 0.66 0.726563
Target:  5'- gCGUaGUaGGCCagcgUCGCCGcggcgcccGCGGCGGCGa -3'
miRNA:   3'- -GCA-CGaCCGGg---AGCGGC--------UGCUGCUGC- -5'
23623 3' -60.4 NC_005261.1 + 67947 0.66 0.726563
Target:  5'- --cGCcGGCCCgcucgcgcggcCGCCG-CGGCGAUGg -3'
miRNA:   3'- gcaCGaCCGGGa----------GCGGCuGCUGCUGC- -5'
23623 3' -60.4 NC_005261.1 + 68689 0.77 0.188833
Target:  5'- gCGUGggGGCCggCGCgGACGACGGCGg -3'
miRNA:   3'- -GCACgaCCGGgaGCGgCUGCUGCUGC- -5'
23623 3' -60.4 NC_005261.1 + 68717 0.67 0.697729
Target:  5'- --cGCcGGCCCUCacgcgGCgGGCGcCGGCGg -3'
miRNA:   3'- gcaCGaCCGGGAG-----CGgCUGCuGCUGC- -5'
23623 3' -60.4 NC_005261.1 + 69255 0.77 0.188833
Target:  5'- --cGCUGGCCCgCGCCGACccCGGCGa -3'
miRNA:   3'- gcaCGACCGGGaGCGGCUGcuGCUGC- -5'
23623 3' -60.4 NC_005261.1 + 69488 0.7 0.522058
Target:  5'- gCGaUGCUGGUgcaCCUguaCGCCGGCGGCGGg- -3'
miRNA:   3'- -GC-ACGACCG---GGA---GCGGCUGCUGCUgc -5'
23623 3' -60.4 NC_005261.1 + 69540 0.73 0.365903
Target:  5'- --cGCUGGCgCgcgCGCUGGgGACGGCGg -3'
miRNA:   3'- gcaCGACCGgGa--GCGGCUgCUGCUGC- -5'
23623 3' -60.4 NC_005261.1 + 70500 0.67 0.688005
Target:  5'- aCGUaGCUGGCgUUCGgCGccACGGgGACGa -3'
miRNA:   3'- -GCA-CGACCGgGAGCgGC--UGCUgCUGC- -5'
23623 3' -60.4 NC_005261.1 + 71990 0.72 0.372921
Target:  5'- gGUGCgcagcgucgccccUGGCCUUaaCGCCGGgGGCGACGc -3'
miRNA:   3'- gCACG-------------ACCGGGA--GCGGCUgCUGCUGC- -5'
23623 3' -60.4 NC_005261.1 + 73779 0.69 0.531555
Target:  5'- --cGCUGGCCUgcgacgugCGCgCGGCGGuCGGCGc -3'
miRNA:   3'- gcaCGACCGGGa-------GCG-GCUGCU-GCUGC- -5'
23623 3' -60.4 NC_005261.1 + 74908 0.66 0.74542
Target:  5'- cCGcGCUGGCCg-CGCgGGgGAgGGCGa -3'
miRNA:   3'- -GCaCGACCGGgaGCGgCUgCUgCUGC- -5'
23623 3' -60.4 NC_005261.1 + 75050 0.67 0.657621
Target:  5'- -cUGCUGGCCaugguguacaccgCgcgCGCCGGCGGgGGCu -3'
miRNA:   3'- gcACGACCGG-------------Ga--GCGGCUGCUgCUGc -5'
23623 3' -60.4 NC_005261.1 + 75863 0.67 0.658605
Target:  5'- aCG-GC-GGCCCcgacggCGCCGugGGCGcGCGc -3'
miRNA:   3'- -GCaCGaCCGGGa-----GCGGCugCUGC-UGC- -5'
23623 3' -60.4 NC_005261.1 + 76423 0.68 0.593574
Target:  5'- gCGUGCagagcgccggcgccaUGGCggaCgCGcCCGACGGCGACGg -3'
miRNA:   3'- -GCACG---------------ACCGg--GaGC-GGCUGCUGCUGC- -5'
23623 3' -60.4 NC_005261.1 + 76672 1.08 0.001544
Target:  5'- cCGUGCUGGCCCUCGCCGACGACGACGc -3'
miRNA:   3'- -GCACGACCGGGAGCGGCUGCUGCUGC- -5'
23623 3' -60.4 NC_005261.1 + 76735 0.68 0.609307
Target:  5'- --aGCUGGCCgacgugCUCGCgGACGugG-CGc -3'
miRNA:   3'- gcaCGACCGG------GAGCGgCUGCugCuGC- -5'
23623 3' -60.4 NC_005261.1 + 76920 0.68 0.619162
Target:  5'- gCGUGCUGGgCCgccgCGUCGggaccaucguuACGuACGACGc -3'
miRNA:   3'- -GCACGACCgGGa---GCGGC-----------UGC-UGCUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.