miRNA display CGI


Results 1 - 20 of 94 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23624 3' -52.1 NC_005261.1 + 43704 0.66 0.987359
Target:  5'- cCUGGCCUGccACGcgCUgcgCgaGCACGCGCg -3'
miRNA:   3'- -GGUUGGAC--UGCaaGGa--Ga-CGUGUGCG- -5'
23624 3' -52.1 NC_005261.1 + 93257 0.66 0.987359
Target:  5'- uUCGACC-GGCGcgCCa--GCGCGCGCc -3'
miRNA:   3'- -GGUUGGaCUGCaaGGagaCGUGUGCG- -5'
23624 3' -52.1 NC_005261.1 + 82639 0.66 0.987359
Target:  5'- gCCGACaUGugGUgg-UCguaGCACGCGCg -3'
miRNA:   3'- -GGUUGgACugCAaggAGa--CGUGUGCG- -5'
23624 3' -52.1 NC_005261.1 + 51327 0.66 0.987359
Target:  5'- gCCGccGCCUu-CGUcgggcUCUUCUGCAC-CGCu -3'
miRNA:   3'- -GGU--UGGAcuGCA-----AGGAGACGUGuGCG- -5'
23624 3' -52.1 NC_005261.1 + 51285 0.66 0.987359
Target:  5'- gCCGuCCUGgccGCGgccaccuaCCUC-GCGCACGCc -3'
miRNA:   3'- -GGUuGGAC---UGCaa------GGAGaCGUGUGCG- -5'
23624 3' -52.1 NC_005261.1 + 11872 0.66 0.985709
Target:  5'- gUCAGCUgcggGGCGagCC-CgcccGCACGCGCg -3'
miRNA:   3'- -GGUUGGa---CUGCaaGGaGa---CGUGUGCG- -5'
23624 3' -52.1 NC_005261.1 + 77061 0.66 0.985709
Target:  5'- aCCGcGCCUGGcCGgugCCgcgCgagGCGCugGCg -3'
miRNA:   3'- -GGU-UGGACU-GCaa-GGa--Ga--CGUGugCG- -5'
23624 3' -52.1 NC_005261.1 + 104719 0.66 0.985709
Target:  5'- aCGGCCgagGGCGcgucgugCCgcgUGCGCGCGCc -3'
miRNA:   3'- gGUUGGa--CUGCaa-----GGag-ACGUGUGCG- -5'
23624 3' -52.1 NC_005261.1 + 24598 0.66 0.9839
Target:  5'- cCCAGuCCcGGCGgcCCUCUcgGCACAC-Ca -3'
miRNA:   3'- -GGUU-GGaCUGCaaGGAGA--CGUGUGcG- -5'
23624 3' -52.1 NC_005261.1 + 116386 0.66 0.9839
Target:  5'- gCCGAUC-GGgGggCCgcgUGCACGCGCa -3'
miRNA:   3'- -GGUUGGaCUgCaaGGag-ACGUGUGCG- -5'
23624 3' -52.1 NC_005261.1 + 7611 0.66 0.9839
Target:  5'- cCCGGCCgcugGAUcugCCUCUGCuGC-CGCc -3'
miRNA:   3'- -GGUUGGa---CUGcaaGGAGACG-UGuGCG- -5'
23624 3' -52.1 NC_005261.1 + 53324 0.66 0.9839
Target:  5'- -aGGCCgcaGGUGUgcgCCUCUGCGCcCGCc -3'
miRNA:   3'- ggUUGGa--CUGCAa--GGAGACGUGuGCG- -5'
23624 3' -52.1 NC_005261.1 + 93832 0.66 0.982734
Target:  5'- gCAGCCgccgGGCGgcgccgccgagcagUCCaCgagGCGCGCGCa -3'
miRNA:   3'- gGUUGGa---CUGCa-------------AGGaGa--CGUGUGCG- -5'
23624 3' -52.1 NC_005261.1 + 43490 0.66 0.981921
Target:  5'- -aGGCCUucgcGGCGgaCCUcCUGCGCuGCGCc -3'
miRNA:   3'- ggUUGGA----CUGCaaGGA-GACGUG-UGCG- -5'
23624 3' -52.1 NC_005261.1 + 66513 0.66 0.981921
Target:  5'- gCGACaUUGGCGgcgCCuUCUccagcaGCACGCGCa -3'
miRNA:   3'- gGUUG-GACUGCaa-GG-AGA------CGUGUGCG- -5'
23624 3' -52.1 NC_005261.1 + 88196 0.66 0.981921
Target:  5'- gCCGGCgaGGCGggCCgcgCcgGCaaGCGCGCg -3'
miRNA:   3'- -GGUUGgaCUGCaaGGa--Ga-CG--UGUGCG- -5'
23624 3' -52.1 NC_005261.1 + 128556 0.66 0.981921
Target:  5'- cCCGACucgCUGGCGcUCUggggcccggUUGCGCugGCg -3'
miRNA:   3'- -GGUUG---GACUGCaAGGa--------GACGUGugCG- -5'
23624 3' -52.1 NC_005261.1 + 79799 0.66 0.979766
Target:  5'- aCGGCCaUGGCGUcCCccaacaUGCGCGCGg -3'
miRNA:   3'- gGUUGG-ACUGCAaGGag----ACGUGUGCg -5'
23624 3' -52.1 NC_005261.1 + 57236 0.66 0.979766
Target:  5'- cUCAGCCccacGGCGaUCCgcgugccgCcGCACACGCu -3'
miRNA:   3'- -GGUUGGa---CUGCaAGGa-------GaCGUGUGCG- -5'
23624 3' -52.1 NC_005261.1 + 100852 0.66 0.979766
Target:  5'- gCGACCUGcGCGUcgaaggCCgccagaaGCGCGCGCa -3'
miRNA:   3'- gGUUGGAC-UGCAa-----GGaga----CGUGUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.