Results 21 - 40 of 94 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
23624 | 3' | -52.1 | NC_005261.1 | + | 77061 | 0.66 | 0.985709 |
Target: 5'- aCCGcGCCUGGcCGgugCCgcgCgagGCGCugGCg -3' miRNA: 3'- -GGU-UGGACU-GCaa-GGa--Ga--CGUGugCG- -5' |
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23624 | 3' | -52.1 | NC_005261.1 | + | 24598 | 0.66 | 0.9839 |
Target: 5'- cCCAGuCCcGGCGgcCCUCUcgGCACAC-Ca -3' miRNA: 3'- -GGUU-GGaCUGCaaGGAGA--CGUGUGcG- -5' |
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23624 | 3' | -52.1 | NC_005261.1 | + | 116386 | 0.66 | 0.9839 |
Target: 5'- gCCGAUC-GGgGggCCgcgUGCACGCGCa -3' miRNA: 3'- -GGUUGGaCUgCaaGGag-ACGUGUGCG- -5' |
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23624 | 3' | -52.1 | NC_005261.1 | + | 7611 | 0.66 | 0.9839 |
Target: 5'- cCCGGCCgcugGAUcugCCUCUGCuGC-CGCc -3' miRNA: 3'- -GGUUGGa---CUGcaaGGAGACG-UGuGCG- -5' |
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23624 | 3' | -52.1 | NC_005261.1 | + | 53324 | 0.66 | 0.9839 |
Target: 5'- -aGGCCgcaGGUGUgcgCCUCUGCGCcCGCc -3' miRNA: 3'- ggUUGGa--CUGCAa--GGAGACGUGuGCG- -5' |
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23624 | 3' | -52.1 | NC_005261.1 | + | 11872 | 0.66 | 0.985709 |
Target: 5'- gUCAGCUgcggGGCGagCC-CgcccGCACGCGCg -3' miRNA: 3'- -GGUUGGa---CUGCaaGGaGa---CGUGUGCG- -5' |
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23624 | 3' | -52.1 | NC_005261.1 | + | 32543 | 0.67 | 0.962673 |
Target: 5'- cCCGGCCgcgGcGCGggCCg--GCGCGCGUg -3' miRNA: 3'- -GGUUGGa--C-UGCaaGGagaCGUGUGCG- -5' |
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23624 | 3' | -52.1 | NC_005261.1 | + | 70686 | 0.67 | 0.966053 |
Target: 5'- uCCAGCCaGGCG-UCCagCgcgGCcCGCGCg -3' miRNA: 3'- -GGUUGGaCUGCaAGGa-Ga--CGuGUGCG- -5' |
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23624 | 3' | -52.1 | NC_005261.1 | + | 86768 | 0.67 | 0.966053 |
Target: 5'- uCCAggcACgUGACG-UCCUCgucgaACACGCu -3' miRNA: 3'- -GGU---UGgACUGCaAGGAGacg--UGUGCG- -5' |
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23624 | 3' | -52.1 | NC_005261.1 | + | 18423 | 0.67 | 0.966053 |
Target: 5'- cCCAGCgCaGACG-UCCUCgccggGCAgCGCGUu -3' miRNA: 3'- -GGUUG-GaCUGCaAGGAGa----CGU-GUGCG- -5' |
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23624 | 3' | -52.1 | NC_005261.1 | + | 84574 | 0.67 | 0.966053 |
Target: 5'- aCGGCCccguaGACGgcCgUCUGCGCcaGCGCg -3' miRNA: 3'- gGUUGGa----CUGCaaGgAGACGUG--UGCG- -5' |
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23624 | 3' | -52.1 | NC_005261.1 | + | 97906 | 0.67 | 0.968907 |
Target: 5'- aCCGucugggcGCCgGGCGUcCCcgCUGUACugGCc -3' miRNA: 3'- -GGU-------UGGaCUGCAaGGa-GACGUGugCG- -5' |
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23624 | 3' | -52.1 | NC_005261.1 | + | 56317 | 0.67 | 0.969213 |
Target: 5'- gCCugcuaCUGACGagCCUg-GCGCGCGCc -3' miRNA: 3'- -GGuug--GACUGCaaGGAgaCGUGUGCG- -5' |
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23624 | 3' | -52.1 | NC_005261.1 | + | 110326 | 0.67 | 0.969213 |
Target: 5'- aCCGcgccGCCgcgGACGcg---CUGCGCGCGCa -3' miRNA: 3'- -GGU----UGGa--CUGCaaggaGACGUGUGCG- -5' |
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23624 | 3' | -52.1 | NC_005261.1 | + | 126067 | 0.67 | 0.972156 |
Target: 5'- gCCAGCCgccCGccggCCUCgGCGgGCGCg -3' miRNA: 3'- -GGUUGGacuGCaa--GGAGaCGUgUGCG- -5' |
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23624 | 3' | -52.1 | NC_005261.1 | + | 104281 | 0.67 | 0.972156 |
Target: 5'- gCGGCUgcGCGggCCUCgcaggcccGCGCGCGCu -3' miRNA: 3'- gGUUGGacUGCaaGGAGa-------CGUGUGCG- -5' |
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23624 | 3' | -52.1 | NC_005261.1 | + | 132603 | 0.68 | 0.955223 |
Target: 5'- cCCGGCCcGGCGagCCgccaggggGCGCugGCg -3' miRNA: 3'- -GGUUGGaCUGCaaGGaga-----CGUGugCG- -5' |
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23624 | 3' | -52.1 | NC_005261.1 | + | 40570 | 0.68 | 0.956788 |
Target: 5'- uCCAGCgccuccacgaacucgCUGACGUUCgUgUGCAgCACGg -3' miRNA: 3'- -GGUUG---------------GACUGCAAGgAgACGU-GUGCg -5' |
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23624 | 3' | -52.1 | NC_005261.1 | + | 3525 | 0.68 | 0.959064 |
Target: 5'- uCCAGCgC-GGCGgccgCCUCgGCGCGCaGCg -3' miRNA: 3'- -GGUUG-GaCUGCaa--GGAGaCGUGUG-CG- -5' |
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23624 | 3' | -52.1 | NC_005261.1 | + | 68260 | 0.68 | 0.955223 |
Target: 5'- aCuGCCUGGCGcgCCUgcGCcCGCGCg -3' miRNA: 3'- gGuUGGACUGCaaGGAgaCGuGUGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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