miRNA display CGI


Results 41 - 60 of 94 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23624 3' -52.1 NC_005261.1 + 89487 0.68 0.946825
Target:  5'- gCUGGCCuucaUGACGUUCCUCaagcaGUACuCGCc -3'
miRNA:   3'- -GGUUGG----ACUGCAAGGAGa----CGUGuGCG- -5'
23624 3' -52.1 NC_005261.1 + 110289 0.68 0.942261
Target:  5'- uCCuuCCUGGCGggCgC-CUGCGC-CGCc -3'
miRNA:   3'- -GGuuGGACUGCaaG-GaGACGUGuGCG- -5'
23624 3' -52.1 NC_005261.1 + 38941 0.68 0.942261
Target:  5'- gCGGCCgGGCGggCCgcgGCGCGCGg -3'
miRNA:   3'- gGUUGGaCUGCaaGGagaCGUGUGCg -5'
23624 3' -52.1 NC_005261.1 + 20768 0.68 0.942261
Target:  5'- gCCGACUUGuACGcgCCcgUCUucGCGCACGUc -3'
miRNA:   3'- -GGUUGGAC-UGCaaGG--AGA--CGUGUGCG- -5'
23624 3' -52.1 NC_005261.1 + 1822 0.68 0.942261
Target:  5'- -gAGCCgcGCGUaagcggCCUCgGCGCGCGCg -3'
miRNA:   3'- ggUUGGacUGCAa-----GGAGaCGUGUGCG- -5'
23624 3' -52.1 NC_005261.1 + 89094 0.68 0.951145
Target:  5'- gCGGCCcgGGCGcgCUg--GCGCGCGCg -3'
miRNA:   3'- gGUUGGa-CUGCaaGGagaCGUGUGCG- -5'
23624 3' -52.1 NC_005261.1 + 102455 0.68 0.951563
Target:  5'- cCCGGCCUcGGCGcgcaggcgccggaccUCCUCgGCGCGcCGCc -3'
miRNA:   3'- -GGUUGGA-CUGCa--------------AGGAGaCGUGU-GCG- -5'
23624 3' -52.1 NC_005261.1 + 112813 0.68 0.959064
Target:  5'- gCCGgggacGCgCUGACGggcuccaaCCUCUGCACggagaucgugcaGCGCg -3'
miRNA:   3'- -GGU-----UG-GACUGCaa------GGAGACGUG------------UGCG- -5'
23624 3' -52.1 NC_005261.1 + 3525 0.68 0.959064
Target:  5'- uCCAGCgC-GGCGgccgCCUCgGCGCGCaGCg -3'
miRNA:   3'- -GGUUG-GaCUGCaa--GGAGaCGUGUG-CG- -5'
23624 3' -52.1 NC_005261.1 + 40570 0.68 0.956788
Target:  5'- uCCAGCgccuccacgaacucgCUGACGUUCgUgUGCAgCACGg -3'
miRNA:   3'- -GGUUG---------------GACUGCAAGgAgACGU-GUGCg -5'
23624 3' -52.1 NC_005261.1 + 132603 0.68 0.955223
Target:  5'- cCCGGCCcGGCGagCCgccaggggGCGCugGCg -3'
miRNA:   3'- -GGUUGGaCUGCaaGGaga-----CGUGugCG- -5'
23624 3' -52.1 NC_005261.1 + 68260 0.68 0.955223
Target:  5'- aCuGCCUGGCGcgCCUgcGCcCGCGCg -3'
miRNA:   3'- gGuUGGACUGCaaGGAgaCGuGUGCG- -5'
23624 3' -52.1 NC_005261.1 + 131910 0.68 0.955223
Target:  5'- aCCcGCUgGACGggCUUUuugGCGCGCGCg -3'
miRNA:   3'- -GGuUGGaCUGCaaGGAGa--CGUGUGCG- -5'
23624 3' -52.1 NC_005261.1 + 94624 0.68 0.955223
Target:  5'- gCCGccGCC-GGCGccgUCgUCgGCGCGCGCg -3'
miRNA:   3'- -GGU--UGGaCUGCa--AGgAGaCGUGUGCG- -5'
23624 3' -52.1 NC_005261.1 + 84128 0.68 0.955223
Target:  5'- gCAGCgggcggggucgCUGGCGggCCUCgGC-CACGCc -3'
miRNA:   3'- gGUUG-----------GACUGCaaGGAGaCGuGUGCG- -5'
23624 3' -52.1 NC_005261.1 + 10256 0.68 0.954826
Target:  5'- gCCGcggGCCUGGCGc-CUUCUGCccugaggACugGCg -3'
miRNA:   3'- -GGU---UGGACUGCaaGGAGACG-------UGugCG- -5'
23624 3' -52.1 NC_005261.1 + 55370 0.69 0.93745
Target:  5'- cCCAGCCUGGCccgCCgccgCUGC-CGcCGCc -3'
miRNA:   3'- -GGUUGGACUGcaaGGa---GACGuGU-GCG- -5'
23624 3' -52.1 NC_005261.1 + 54877 0.69 0.93745
Target:  5'- aCGGCCgGAUGaugCgUCgGCGCGCGCg -3'
miRNA:   3'- gGUUGGaCUGCaa-GgAGaCGUGUGCG- -5'
23624 3' -52.1 NC_005261.1 + 29738 0.69 0.93745
Target:  5'- gCGACCaGAagcUGUUCCUCcUGCagagccugcgGCGCGCg -3'
miRNA:   3'- gGUUGGaCU---GCAAGGAG-ACG----------UGUGCG- -5'
23624 3' -52.1 NC_005261.1 + 46509 0.69 0.935958
Target:  5'- gCAGCCcGGCGUcgcgcagcaccgccUCCgCUGCGCGCugGCa -3'
miRNA:   3'- gGUUGGaCUGCA--------------AGGaGACGUGUG--CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.