Results 61 - 80 of 94 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
23624 | 3' | -52.1 | NC_005261.1 | + | 75866 | 0.69 | 0.92152 |
Target: 5'- gCGGCCccGACGgcgCCguggGCGCGCGCa -3' miRNA: 3'- gGUUGGa-CUGCaa-GGaga-CGUGUGCG- -5' |
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23624 | 3' | -52.1 | NC_005261.1 | + | 62672 | 0.69 | 0.93239 |
Target: 5'- gCCAGCgccACG-UCCgccagCUGCACGCGCc -3' miRNA: 3'- -GGUUGgacUGCaAGGa----GACGUGUGCG- -5' |
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23624 | 3' | -52.1 | NC_005261.1 | + | 101512 | 0.69 | 0.93239 |
Target: 5'- gCCAGCCcGGCGc-CCUCgucgcgGuCGCGCGCc -3' miRNA: 3'- -GGUUGGaCUGCaaGGAGa-----C-GUGUGCG- -5' |
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23624 | 3' | -52.1 | NC_005261.1 | + | 46509 | 0.69 | 0.935958 |
Target: 5'- gCAGCCcGGCGUcgcgcagcaccgccUCCgCUGCGCGCugGCa -3' miRNA: 3'- gGUUGGaCUGCA--------------AGGaGACGUGUG--CG- -5' |
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23624 | 3' | -52.1 | NC_005261.1 | + | 29738 | 0.69 | 0.93745 |
Target: 5'- gCGACCaGAagcUGUUCCUCcUGCagagccugcgGCGCGCg -3' miRNA: 3'- gGUUGGaCU---GCAAGGAG-ACG----------UGUGCG- -5' |
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23624 | 3' | -52.1 | NC_005261.1 | + | 54877 | 0.69 | 0.93745 |
Target: 5'- aCGGCCgGAUGaugCgUCgGCGCGCGCg -3' miRNA: 3'- gGUUGGaCUGCaa-GgAGaCGUGUGCG- -5' |
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23624 | 3' | -52.1 | NC_005261.1 | + | 55370 | 0.69 | 0.93745 |
Target: 5'- cCCAGCCUGGCccgCCgccgCUGC-CGcCGCc -3' miRNA: 3'- -GGUUGGACUGcaaGGa---GACGuGU-GCG- -5' |
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23624 | 3' | -52.1 | NC_005261.1 | + | 96281 | 0.69 | 0.93745 |
Target: 5'- aCGACgCUGGCGcggcuucggCCUCgGCcGCGCGCa -3' miRNA: 3'- gGUUG-GACUGCaa-------GGAGaCG-UGUGCG- -5' |
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23624 | 3' | -52.1 | NC_005261.1 | + | 47386 | 0.7 | 0.890002 |
Target: 5'- aCAACCgucggGGCGgcgCCgccccccgUGCACACGCg -3' miRNA: 3'- gGUUGGa----CUGCaa-GGag------ACGUGUGCG- -5' |
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23624 | 3' | -52.1 | NC_005261.1 | + | 115337 | 0.7 | 0.890002 |
Target: 5'- --uACCggGACGUguaCUUCaUGCGCACGCu -3' miRNA: 3'- gguUGGa-CUGCAa--GGAG-ACGUGUGCG- -5' |
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23624 | 3' | -52.1 | NC_005261.1 | + | 82878 | 0.7 | 0.903345 |
Target: 5'- aCGGCgCUGGCGguggCCUC-GC-CGCGCg -3' miRNA: 3'- gGUUG-GACUGCaa--GGAGaCGuGUGCG- -5' |
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23624 | 3' | -52.1 | NC_005261.1 | + | 36922 | 0.71 | 0.836103 |
Target: 5'- -gGGCCggGACGUacUCCggggccCUGCGCugGCg -3' miRNA: 3'- ggUUGGa-CUGCA--AGGa-----GACGUGugCG- -5' |
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23624 | 3' | -52.1 | NC_005261.1 | + | 113651 | 0.71 | 0.844443 |
Target: 5'- aCCAggagcGCCUGAUcgaCCUCUGCGCcgaccGCGCc -3' miRNA: 3'- -GGU-----UGGACUGcaaGGAGACGUG-----UGCG- -5' |
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23624 | 3' | -52.1 | NC_005261.1 | + | 5969 | 0.71 | 0.85258 |
Target: 5'- gCUAGCUcGGC--UCCUCUGC-CGCGCg -3' miRNA: 3'- -GGUUGGaCUGcaAGGAGACGuGUGCG- -5' |
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23624 | 3' | -52.1 | NC_005261.1 | + | 58886 | 0.71 | 0.860508 |
Target: 5'- ---uCCgGGCGggCCUCgcagGCGCGCGCc -3' miRNA: 3'- gguuGGaCUGCaaGGAGa---CGUGUGCG- -5' |
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23624 | 3' | -52.1 | NC_005261.1 | + | 32223 | 0.71 | 0.860508 |
Target: 5'- gCCGGCCgcGGCGguggCCuUCUGCGCGgcCGCg -3' miRNA: 3'- -GGUUGGa-CUGCaa--GG-AGACGUGU--GCG- -5' |
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23624 | 3' | -52.1 | NC_005261.1 | + | 106108 | 0.71 | 0.86822 |
Target: 5'- gUCGGCC-GGCGUcgCCg--GCGCGCGCg -3' miRNA: 3'- -GGUUGGaCUGCAa-GGagaCGUGUGCG- -5' |
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23624 | 3' | -52.1 | NC_005261.1 | + | 70821 | 0.71 | 0.875711 |
Target: 5'- gCGGCCccgGGCGcgCCg--GCGCGCGCg -3' miRNA: 3'- gGUUGGa--CUGCaaGGagaCGUGUGCG- -5' |
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23624 | 3' | -52.1 | NC_005261.1 | + | 110591 | 0.71 | 0.875711 |
Target: 5'- gCCGGCCUGcGCGUUCCUggacGUGgACGCc -3' miRNA: 3'- -GGUUGGAC-UGCAAGGAga--CGUgUGCG- -5' |
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23624 | 3' | -52.1 | NC_005261.1 | + | 68294 | 0.71 | 0.875711 |
Target: 5'- cCCGGCCgcgGGCGcggaCCUCUGCgGC-CGCu -3' miRNA: 3'- -GGUUGGa--CUGCaa--GGAGACG-UGuGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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